Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22450 162 / 1e-50 ATCOX6B2, COX6B CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) AT4G28060 140 / 1e-43 Cytochrome c oxidase, subunit Vib family protein (.1) AT5G57815 137 / 3e-42 Cytochrome c oxidase, subunit Vib family protein (.1) AT1G32710 70 / 2e-15 Cytochrome c oxidase, subunit Vib family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020941 [exp] 224 / 1e-74 AT1G22450 138 / 9e-41 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10010345 [exp] 146 / 6e-46 AT1G22450 142 / 4e-46 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10036478 [exp] 145 / 2e-45 AT1G22450 146 / 2e-46 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10040123 [exp] 122 / 8e-36 AT1G22450 121 / 9e-36 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G162100 [exp] 167 / 7e-53 AT1G22450 152 / 4e-47 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Potri.018G099900 [exp] 147 / 3e-46 AT5G57815 147 / 3e-48 Cytochrome c oxidase, subunit Vib family protein (.1) Potri.002G100000 [exp] 142 / 7e-43 AT1G22450 123 / 2e-35 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0351 [flax] [poplar] CHCH PF02297 [flax] [poplar] COX6B Cytochrome oxidase c subunit VIb
Representative CDS sequence Show only first row Show all	>Lus10008716 pacid=23161978 polypeptide=Lus10008716 locus=Lus10008716.g ID=Lus10008716.BGIv1.0 annot-version=v1.0 ATGCAGCAATACTTGTTGAAGAAGGATGAGAAACCAGCTGTTAAAGATGAATCAGTTCCTGCTCCTGCTGATTCTGTAGAATCTGTCGCAGATAAACCTG TGGAAATAGCTGAAGCCGTCCAAGAAAAAGCTGTAGAAACAGCAGAAGCTGTGGCAGAGAATACAAAAGAAACGGCAGAAGCTGTGGTAGAGAAAGCTGC AGAAATAACAGAAGCTGTTCCCGTAGACAAAACTGAAGATTCTCCTGCTGTAGATGCTCCTGCTATGGAAGAATCTGACTCAAAAGATGCTCCTCCCTCT GTAGAAGAAACCACTGAAGCTGCTCAAGAAAACTCAGGAAATGAAGAAGCTGCAGAAGAGGCACCTGAAATAAAGCTTGAGACTGCACCAGCAGATTACC GATTTCCAACCACAAACCAAACAAGGCACTGCTTTACTCGCTATATTGAGTATCATCGATGCGTGGCTGCTAAAGGAGAAGATGCTCAAGAGTGTGACAA GTACGCCAAATTCTACCGCTCCCTTTGCCCCAGTGAATGGGTTGAGAGATGGAATGAGCAAAGGGAGAATGGTACATTCCCAGGTCCACTTTAA
AA sequence Show only first row Show all	>Lus10008716 pacid=23161978 polypeptide=Lus10008716 locus=Lus10008716.g ID=Lus10008716.BGIv1.0 annot-version=v1.0 MQQYLLKKDEKPAVKDESVPAPADSVESVADKPVEIAEAVQEKAVETAEAVAENTKETAEAVVEKAAEITEAVPVDKTEDSPAVDAPAMEESDSKDAPPS VEETTEAAQENSGNEEAAEEAPEIKLETAPADYRFPTTNQTRHCFTRYIEYHRCVAAKGEDAQECDKYAKFYRSLCPSEWVERWNEQRENGTFPGPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10008716 [exp]	0	1
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10020941 [exp]	1.0	0.8389
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10001959 [exp]	7.3	0.8061
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017437 [exp]	7.9	0.7771
AT3G27240			Cytochrome C1 family (.1)		Lus10041579 [exp]	11.0	0.6780
AT5G08580			Calcium-binding EF hand family...		Lus10010165 [exp]	14.7	0.7058
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019420 [exp]	25.7	0.7007
AT4G24330			Protein of unknown function (D...		Lus10019957 [exp]	27.4	0.7260
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10019546 [exp]	29.1	0.6550
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016418 [exp]	30.3	0.6677
AT4G20960			Cytidine/deoxycytidylate deami...		Lus10030388 [exp]	31.7	0.6656

Compare expression of checked genes

Lus10008716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.