Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09010 449 / 2e-158 TL29, APX4 thylakoid lumen 29, ascorbate peroxidase 4 (.1) AT3G09640 64 / 1e-11 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT4G35970 64 / 3e-11 APX5 ascorbate peroxidase 5 (.1) AT4G35000 63 / 4e-11 APX3 ascorbate peroxidase 3 (.1) AT4G32320 60 / 1e-09 APX6 ascorbate peroxidase 6 (.1) AT1G07890 54 / 4e-08 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020942 [exp] 656 / 0 AT4G09010 473 / 6e-168 thylakoid lumen 29, ascorbate peroxidase 4 (.1) Lus10019781 [exp] 75 / 1e-14 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10014128 [exp] 72 / 8e-14 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10028432 [exp] 71 / 2e-13 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1) Lus10000180 [exp] 68 / 1e-12 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10019906 [exp] 64 / 1e-11 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10015970 [exp] 62 / 2e-10 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10013537 [exp] 59 / 1e-09 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10002916 [exp] 49 / 3e-06 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G161900 [exp] 510 / 0 AT4G09010 451 / 7e-160 thylakoid lumen 29, ascorbate peroxidase 4 (.1) Potri.009G015400 [exp] 64 / 2e-11 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.004G174500 [exp] 64 / 2e-11 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.016G084800 [exp] 63 / 4e-11 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.005G112200 [exp] 62 / 2e-10 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.006G132200 [exp] 59 / 7e-10 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G254500 [exp] 59 / 1e-09 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1) Potri.009G134100 [exp] 59 / 1e-09 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10008718 pacid=23161986 polypeptide=Lus10008718 locus=Lus10008718.g ID=Lus10008718.BGIv1.0 annot-version=v1.0 ATGAATGTTAGAACTCAGAAGCCATATCCTCCTTTGGCTGTCAAAGCAAGCAAGCAGGCAGCTATGGGAGTTTCATTCTTGTCGACGACTGTTGTCCCTT CTCTGCATCATATCCCATTCCTGAGATCCTCTTCCTCCTCCAATGCTGCTGCTGCTTCTGTTTCCCCCTCCTCTAGACATGTTACCGCTTCTGCTACTCC TACAATTCGGTGTGCTATTGATGGAGGTGGTGGTGGCATCCGGAGAAGAGATGTTTTGACATGTTTTGGTGCCACCGTTGGGCTGGAAGTTGTGGGAAGC TTAGGATCGTTCCTGGAAACGGCTAGCGCTGCTGACCTTATCCAACGCAGACAACGATCAGATTTCCAGTCAACCATTAAGGATACTCTTTTCACAGCAA TTAAGGGAAATCCTGAAGTCATCCCATCCTTGTTGACTTTGGCCCTCAACGACGTTATGACTTATGACAAGGCTACCAAATCTGGAGGACCAAACGGATC AGTACGATTCAGCTCAGAGATGAGCAGACTTGAAAACAAGGGACTGTCTGTGGCTTTGGATTTACTAGGAGAAGCAAAGAAGGAGATTGATTCCAACTCC AAGGGTGGTCCTATCTCCTTTGCTGATCTTATCCAGTTTGGAGCACAAAGTGCTCTCAAGGCTACATTCCTAGCAGCAGCAATTCGCAAGTGTGGCGGAA ACGAAGAGAAAGGTTCATTGCTGTACAGAGCTTACGGCTCCGCTGGCCAGTGGGGCTTATTCGATAGGCAGTTTGGAAGGACAGATGCAGAGGAGCCGGA TCCAGATGGAAGAGTTCCTCAATGGGAGAAAGCTAGTGTGCAGGAAATGAAAGACAAGTTCGTAGCAGTTGGGCTTGGTCCTCGCCAGCTGGCTGTTATG TCCGCATTCCTGGGGCCGGATCAAGCTGCTACCGAGGCGATGCTGGCCACAGACCCTGATGTTCTGCCGTGGGTTCAGAAGTACCAACGCAGTCGAGAGA CTGTGTCCGAGACAGATTACGAGGTTGATCTTATTACGGCTCTAACGAAATTAAGCAGCCTAGGCCAGAACATCAATTATGAGGCCTACACCTATGCTGT CCCTAGAATTGATGTGTCCAAACTCAAGCTGTAG
AA sequence Show only first row Show all	>Lus10008718 pacid=23161986 polypeptide=Lus10008718 locus=Lus10008718.g ID=Lus10008718.BGIv1.0 annot-version=v1.0 MNVRTQKPYPPLAVKASKQAAMGVSFLSTTVVPSLHHIPFLRSSSSSNAAAASVSPSSRHVTASATPTIRCAIDGGGGGIRRRDVLTCFGATVGLEVVGS LGSFLETASAADLIQRRQRSDFQSTIKDTLFTAIKGNPEVIPSLLTLALNDVMTYDKATKSGGPNGSVRFSSEMSRLENKGLSVALDLLGEAKKEIDSNS KGGPISFADLIQFGAQSALKATFLAAAIRKCGGNEEKGSLLYRAYGSAGQWGLFDRQFGRTDAEEPDPDGRVPQWEKASVQEMKDKFVAVGLGPRQLAVM SAFLGPDQAATEAMLATDPDVLPWVQKYQRSRETVSETDYEVDLITALTKLSSLGQNINYEAYTYAVPRIDVSKLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10008718 [exp]	0	1
AT5G02160			unknown protein		Lus10024373 [exp]	2.0	0.9453
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10031342 [exp]	2.2	0.9405
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10020942 [exp]	2.2	0.9484
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001169 [exp]	2.4	0.9375
AT3G59780			Rhodanese/Cell cycle control p...		Lus10025587 [exp]	3.0	0.9444
AT3G45050			unknown protein		Lus10041331 [exp]	7.2	0.9436
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10008721 [exp]	11.4	0.9274
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10020071 [exp]	12.2	0.9047
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016728 [exp]	12.7	0.9304
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10042931 [exp]	13.7	0.8848

Compare expression of checked genes

Lus10008718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.