Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22460 660 / 0 O-fucosyltransferase family protein (.1) AT5G64600 539 / 0 O-fucosyltransferase family protein (.1) AT2G37980 420 / 1e-140 O-fucosyltransferase family protein (.1) AT3G54100 404 / 2e-134 O-fucosyltransferase family protein (.1) AT5G01100 403 / 2e-134 O-fucosyltransferase family protein (.1) AT5G35570 401 / 2e-133 O-fucosyltransferase family protein (.1) AT1G14020 396 / 3e-133 O-fucosyltransferase family protein (.1) AT2G03280 386 / 1e-129 O-fucosyltransferase family protein (.1.2) AT5G15740 382 / 1e-127 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 382 / 2e-127 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020943 [exp] 945 / 0 AT1G22460 594 / 0.0 O-fucosyltransferase family protein (.1) Lus10020882 [exp] 490 / 4e-170 AT5G64600 613 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 422 / 3e-141 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 417 / 2e-139 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 417 / 2e-139 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 415 / 1e-138 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 406 / 5e-137 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 404 / 3e-136 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 398 / 8e-134 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G161800 [exp] 741 / 0 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 709 / 0 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 558 / 0 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 422 / 2e-140 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 411 / 2e-137 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 397 / 1e-133 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 393 / 4e-132 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 390 / 7e-131 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 387 / 7e-128 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 382 / 7e-128 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10008719 pacid=23161929 polypeptide=Lus10008719 locus=Lus10008719.g ID=Lus10008719.BGIv1.0 annot-version=v1.0 ATGACGGTGCCGCTGAAGCGGAGGAGGAAGGCGATGGCGGTGATGAGGAAGATGCTAACGTGCGCCATATGCGCATTCGCCATGGTCGCAGTTCTCTCCG TTCACGTCCACGACGTTCAAATCTTTCCTCACAGAGTCGCCGTCTTTCCTGATTCGTACAAGCTGTCCACCACTACCACTCAGAAGGGAATGACTGAACA ACAGCAAAGCTGGAGTAGAGAGGTTGTTCCACCCCATTCAAAAGCACCGATTGCTCCTCATCAGTTGGAAGGAGTTACTGTGGTACCTGATCTTAAGCTG TGGAAGCCTCCATCGAATCCTCCTGGAGAGTCAAGGGGTTACCTGTTAGTTCATACCAATGGCGGCCTGAATCAGATGAGGGCAGGGATCTGTGATATGG TCGCTGTTGCTCGGATCATTAATGCCACTCTTGTGATTCCAGAGCTGGATAAAAATTCTTTTTGGCAAGATACTAGCAATTTTTCAGATGTTTTTGATGA GAAGTATTTCATCAGTTCTCTGGCTAGTGATGTAAGAGTTGTAACAAAACTTCCCAGGGAAATTGTGCATGTTACTAAAGCAGTCAAGCATTTTAAAAGC TGGTCTGGCATGGATTACTACCAGGAAGTTGCGAGTCTTTGGGACGAGCATAAGGTTATTCGAGCTGCTAAATCAGATTCTCGCCTAGCAAATAATAATC TTCCTCCAGATGTCCAGAAGTTACGTTGCCGTGCATGTTATGAAGCTCTTCGTTTCTCCCCTCGAATTGAAGCCATGGGAAAGTTATTGGTAGATCGGAT GAGAGCTTACGGTCCTTATATTGCGCTACATCTGCGGTACGAGAAAGACATGCTTGCATTTAGTGGATGCGCTCATGGTTTGTCAGCCGCTGAAGCAATT GAGTTGAAGAATATCAGAGAGAACACACAATACTGGAAAATAAAAGACATTGATTCTGAGGAGCAGCGATCCAAAGGTTATTGTCCCTTAACTCCATCGG AGGTTGCTATGTTTCTTACAGCTCTTGGATACCCATCAAGCACGCCCATATACATTGCTGCCGGGGAGATATATGGTGGTGATGCTCATATGGGTGAATT ACTGTCCCGCTATCCTTTACTAATGAGCAAGGAAAAACTGGCTTCAGTTGAAGAGCTTGAACCATTTCGCAATCATGCTTCTCAAATGGCTGCTCTCGAC TATATTGTGTCTGTGGAAAGTGCTGTCTTCCTCCCAACCTACTCTGGTAACATGGCAAGGGCAGTTGAAGGTCATCGTCGTTATTTGGGACATAGAAAAA CAATTTCTCCTGACAGGAAATCACTTGTTCGTCTTTTCGACAAAGTTGAAAGGCGGAAACTGAAAGAAGGCCGAAATCTTTCAAGCCGTGTTGTTGAACT TCACAAGAAACGGCAAGGATCCCCAAGGAAGAGGAAAGGTCCCATCTCAGGAACAAAAGGCATGGAAAGGTTTCGTTCAGAGGAATCCTTCTATGTGAAT CCTTTACCAGATTGTTTATGTCAGAGGCAATCATCATCAAACACCGGCGGCAACTCTTCTGCAATGAGATAG
AA sequence Show only first row Show all	>Lus10008719 pacid=23161929 polypeptide=Lus10008719 locus=Lus10008719.g ID=Lus10008719.BGIv1.0 annot-version=v1.0 MTVPLKRRRKAMAVMRKMLTCAICAFAMVAVLSVHVHDVQIFPHRVAVFPDSYKLSTTTTQKGMTEQQQSWSREVVPPHSKAPIAPHQLEGVTVVPDLKL WKPPSNPPGESRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVIPELDKNSFWQDTSNFSDVFDEKYFISSLASDVRVVTKLPREIVHVTKAVKHFKS WSGMDYYQEVASLWDEHKVIRAAKSDSRLANNNLPPDVQKLRCRACYEALRFSPRIEAMGKLLVDRMRAYGPYIALHLRYEKDMLAFSGCAHGLSAAEAI ELKNIRENTQYWKIKDIDSEEQRSKGYCPLTPSEVAMFLTALGYPSSTPIYIAAGEIYGGDAHMGELLSRYPLLMSKEKLASVEELEPFRNHASQMAALD YIVSVESAVFLPTYSGNMARAVEGHRRYLGHRKTISPDRKSLVRLFDKVERRKLKEGRNLSSRVVELHKKRQGSPRKRKGPISGTKGMERFRSEESFYVN PLPDCLCQRQSSSNTGGNSSAMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22460			O-fucosyltransferase family pr...		Lus10008719 [exp]	0	1
AT1G22460			O-fucosyltransferase family pr...		Lus10020943 [exp]	1.4	0.8030
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	3.9	0.8207
AT4G05160			AMP-dependent synthetase and l...		Lus10002549 [exp]	4.9	0.7996
AT4G36050			endonuclease/exonuclease/phosp...		Lus10028455 [exp]	5.9	0.7947
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	7.3	0.8011
AT1G51610			Cation efflux family protein (...		Lus10034818 [exp]	9.9	0.7629
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10011018 [exp]	10.0	0.7596
AT4G05160			AMP-dependent synthetase and l...		Lus10027377 [exp]	14.5	0.7623
AT5G13260			unknown protein		Lus10001801 [exp]	21.8	0.7913
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10026093 [exp]	21.9	0.7619

Compare expression of checked genes

Lus10008719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.