Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09040 210 / 2e-67 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 114 / 2e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 85 / 1e-18 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT3G52380 82 / 8e-18 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT2G37220 70 / 1e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G16380 67 / 3e-12 PAB6 poly(A) binding protein 6 (.1) AT2G36660 67 / 4e-12 PAB7 poly(A) binding protein 7 (.1) AT4G34110 60 / 5e-10 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT5G50250 59 / 1e-09 CP31B chloroplast RNA-binding protein 31B (.1) AT3G53460 56 / 8e-09 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020945 [exp] 512 / 0 AT4G09040 219 / 6e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10041138 [exp] 216 / 6e-69 AT4G09040 201 / 7e-63 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10036468 [exp] 164 / 3e-49 AT4G09040 164 / 3e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10035678 [exp] 113 / 3e-29 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10037265 [exp] 108 / 2e-27 AT2G35410 234 / 1e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023723 [exp] 82 / 2e-17 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017962 [exp] 72 / 2e-14 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10026514 [exp] 72 / 4e-14 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10041952 [exp] 71 / 9e-14 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G161000 [exp] 243 / 2e-79 AT4G09040 219 / 5e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G141300 [exp] 111 / 1e-28 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 93 / 1e-21 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.010G065600 [exp] 87 / 1e-19 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G086500 [exp] 87 / 2e-19 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.008G172100 [exp] 86 / 2e-19 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G065900 [exp] 74 / 4e-15 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G202000 [exp] 71 / 9e-14 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G090700 [exp] 68 / 6e-13 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G157300 [exp] 62 / 7e-12 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10008721 pacid=23161940 polypeptide=Lus10008721 locus=Lus10008721.g ID=Lus10008721.BGIv1.0 annot-version=v1.0 ATGGCTTCGCTGCTCCGGCTTTCCTGTTCTCCGGCGCCGTCCTTCTCCTCCGAGCACACAGTTCGTTATCTTCAATGCTCATTTCCTTACCGCCAAACCC TTTCAGTTACTCAACTTCCCACTCACTCTCGTTCCATTTCAATTGGAACCATCGCACTCAGCCGCTTATCCCCTGTTTGTTCTACTACCGCTACTCAAGA TCCAGTTGCTGCCGAAGAAGAATCAGTTAAGACCGAAGAAAAACAAGAAGAATTCTCTACAACGAGAGTGTTGGCTACGAATATCCCATGGACTGCTACC GCAGAAGACATGCGAGCTCTGTTCGAGAAGTTCGGAAAAGTTGTTGACGTTGAGCTTTCGATGTACGGGAAGAACCTGAATAGAGGGTTGGTGTTTGTCT CTATGGGCTCTCCTGAAGAGGCTCGTGCTGCCATGGAAAACCTCCAGTCTTATGAATATGAGGGGCGTATCCTAACAATGAAGTATGCCAAGCTCAAGAA GAAGAAGGCAACACCAATCTTTCTGAAGATGGCACCAACGTACAGCTTGTTTGTTTCAAATCTGCCATTTGAAGCCAAGGAGAAAGATCTCAAGGAGTTG TTCGTGGCAGGAGGAGCTAATGTTGTCTATACAGAGATAATATACCATGCCAATCCTAGAAAGTCCTCTGGCTACGGATTTGTAGCCTTCAAAACCAAAA AAGAAGCTGAAGATGCTCTTTCAGCTTTCCAAGACAAGGAACTTTTGGGAAGACCACTTCGAGTGGCTCGTAGCAAACAATTTGTGAGGCCGCCACGATC TCAAGTTGCTGTAGCAGATGATGCGTCTGCTACAGAGACTAACATCAGTGCTGCCAAAGAGGAAGCCAGTGATACAACTGATAACACAGCTTAA
AA sequence Show only first row Show all	>Lus10008721 pacid=23161940 polypeptide=Lus10008721 locus=Lus10008721.g ID=Lus10008721.BGIv1.0 annot-version=v1.0 MASLLRLSCSPAPSFSSEHTVRYLQCSFPYRQTLSVTQLPTHSRSISIGTIALSRLSPVCSTTATQDPVAAEEESVKTEEKQEEFSTTRVLATNIPWTAT AEDMRALFEKFGKVVDVELSMYGKNLNRGLVFVSMGSPEEARAAMENLQSYEYEGRILTMKYAKLKKKKATPIFLKMAPTYSLFVSNLPFEAKEKDLKEL FVAGGANVVYTEIIYHANPRKSSGYGFVAFKTKKEAEDALSAFQDKELLGRPLRVARSKQFVRPPRSQVAVADDASATETNISAAKEEASDTTDNTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10008721 [exp]	0	1
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10020942 [exp]	1.0	0.9752
AT1G27510			Protein of unknown function (D...		Lus10039967 [exp]	2.6	0.9327
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001741 [exp]	3.5	0.9374
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10022041 [exp]	5.3	0.9582
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10023013 [exp]	5.5	0.9254
AT5G64480			unknown protein		Lus10007107 [exp]	6.2	0.9212
AT5G02160			unknown protein		Lus10024373 [exp]	6.7	0.9299
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10035171 [exp]	6.7	0.9359
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	6.7	0.9393
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10008718 [exp]	11.4	0.9274

Compare expression of checked genes

Lus10008721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.