Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24380 320 / 9e-112 unknown protein AT5G65400 255 / 4e-86 alpha/beta-Hydrolases superfamily protein (.1) AT1G09280 80 / 4e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020946 [exp] 447 / 3e-162 AT4G24380 327 / 1e-114 unknown protein Lus10000004 [exp] 162 / 1e-51 AT4G24380 123 / 2e-37 unknown protein Lus10008045 [exp] 65 / 6e-12 AT1G09280 748 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G102500 [exp] 353 / 2e-125 AT4G24380 334 / 1e-117 unknown protein Potri.006G027000 [exp] 205 / 5e-66 AT4G24380 211 / 4e-68 unknown protein Potri.005G011300 [exp] 67 / 1e-12 AT1G09280 773 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03959 [flax] [poplar] FSH1 Serine hydrolase (FSH1)
Representative CDS sequence Show only first row Show all	>Lus10008722 pacid=23161943 polypeptide=Lus10008722 locus=Lus10008722.g ID=Lus10008722.BGIv1.0 annot-version=v1.0 ATGGGGTCGGAAGGGGAGATGTCACCGACGGGGAGGAAACCAAGGTTTCTATGCTTACACGGGTTCAGAACCAGCGCAGAAATCCTAAAGAAGCAGCTCA ATACGAAATGGCCCGAATCCGTTCTCCAGAAGCTGGACCTCGTCTACGTAGACGCCCCTCATCCCTCGGAGGGAAAATCTGAGGTCGAAGGCATATTCGA TCCTCCTTATTACGAGTGGTTCCAGTTCAACAAGGAGTTCACAGAATACAGGAACTTCGACGAATGCTTAGCGTATATTGAAGAGTGCATGATCAAACAT GCTCCAATCGACGGCCTCCTCGGTTTCTCACAGGGAGCCATCTTGTCGGCTGGACTTCCTGGGCTGCAAGCTAAGGGTTTGGCTCTGACGAAGGTGCCCA AGATAAAGTTCCTGGTAATAATCGGAGGGGCGAAATTCAAGGCACCATCTGTAGCTGAAAAGGCATACGCATCTCCTGTTCAATGCCCTTCCCTTCACTT TCTGGGGGAGTTGGATTTCTTGAAGCCACATGGGAAAGAACTGCTGGAATCGTGTTCAGATGCTGTGATAGTTCATCACCCAAAGGGCCATACCATCCCT AGGATTGATGAGAAGGGAATGGCAACCGTGACGAGCTTTGTTGAAAGGATTCAGAATTTGGTGTCGGAAGAGGGAAATGATGCCAAATAA
AA sequence Show only first row Show all	>Lus10008722 pacid=23161943 polypeptide=Lus10008722 locus=Lus10008722.g ID=Lus10008722.BGIv1.0 annot-version=v1.0 MGSEGEMSPTGRKPRFLCLHGFRTSAEILKKQLNTKWPESVLQKLDLVYVDAPHPSEGKSEVEGIFDPPYYEWFQFNKEFTEYRNFDECLAYIEECMIKH APIDGLLGFSQGAILSAGLPGLQAKGLALTKVPKIKFLVIIGGAKFKAPSVAEKAYASPVQCPSLHFLGELDFLKPHGKELLESCSDAVIVHHPKGHTIP RIDEKGMATVTSFVERIQNLVSEEGNDAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24380			unknown protein		Lus10008722 [exp]	0	1
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10038201 [exp]	4.6	0.8224
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10042718 [exp]	6.2	0.8401
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020484 [exp]	11.7	0.8400
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10011147 [exp]	20.1	0.8332
AT3G22970			Protein of unknown function (D...		Lus10006634 [exp]	20.2	0.7364
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10011778 [exp]	23.3	0.6930
AT5G08720			unknown protein		Lus10025701 [exp]	25.1	0.8330
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	25.5	0.8213
AT5G08720			unknown protein		Lus10035962 [exp]	32.1	0.8254
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10006927 [exp]	32.8	0.8187

Compare expression of checked genes

Lus10008722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.