Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14600 212 / 5e-72 Target SNARE coiled-coil domain protein (.1) AT1G29060 189 / 4e-63 Target SNARE coiled-coil domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020947 [exp] 273 / 2e-96 AT4G14600 209 / 3e-71 Target SNARE coiled-coil domain protein (.1) Lus10041130 [exp] 236 / 2e-81 AT4G14600 189 / 4e-63 Target SNARE coiled-coil domain protein (.1) Lus10036461 [exp] 138 / 3e-43 AT4G14600 109 / 5e-32 Target SNARE coiled-coil domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G159600 [exp] 209 / 4e-71 AT4G14600 194 / 3e-65 Target SNARE coiled-coil domain protein (.1) Potri.002G102400 [exp] 201 / 4e-68 AT4G14600 163 / 5e-53 Target SNARE coiled-coil domain protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008723 pacid=23161958 polypeptide=Lus10008723 locus=Lus10008723.g ID=Lus10008723.BGIv1.0 annot-version=v1.0 ATGGCCGCCAGTTCCAGCCGAGGAGGCGCCTTCTATGGCGGTGCTACTCCCTTTCGATCAAGGGATGGACTTAGTACGCGACAGGCGGCGAGCTCGGACG AAATACAGCTACGAATTGATCCGATGAGCTCCGATTTCGACGATGAGATCACCGGCCTCCGCTCTCAAGTCAAGCAGCTTAGAAATGTGGCTCAGGAAAT CGGGACAGAAGCAAAATTCCAAAAGGATTTTCTCGATCAATTGCAAATGACAGTGATCAAAGCTCAAGCAAGCGTGAAGAACAACGTCAGAAAGCTGAAC AAGAGCATAATCAAGAGTGGATCGAATCACATAGTACACGTGGTTCTTTTCGCGCTGTTTTGCTTCTTCATGGTCTACCTGTGGTCTAAGGTATCCAGAA GATGA
AA sequence Show only first row Show all	>Lus10008723 pacid=23161958 polypeptide=Lus10008723 locus=Lus10008723.g ID=Lus10008723.BGIv1.0 annot-version=v1.0 MAASSSRGGAFYGGATPFRSRDGLSTRQAASSDEIQLRIDPMSSDFDDEITGLRSQVKQLRNVAQEIGTEAKFQKDFLDQLQMTVIKAQASVKNNVRKLN KSIIKSGSNHIVHVVLFALFCFFMVYLWSKVSRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14600			Target SNARE coiled-coil domai...		Lus10008723 [exp]	0	1
AT3G11780			MD-2-related lipid recognition...		Lus10013366 [exp]	2.6	0.8994
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Lus10022253 [exp]	2.8	0.8886
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10037699 [exp]	3.7	0.8959
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000371 [exp]	4.2	0.8799
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10029219 [exp]	4.6	0.8902
AT3G55290			NAD(P)-binding Rossmann-fold s...		Lus10007039 [exp]	10.0	0.8866
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10043349 [exp]	10.9	0.8386
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	16.2	0.8705
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10010926 [exp]	18.2	0.8657
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10009810 [exp]	18.7	0.8660

Compare expression of checked genes

Lus10008723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.