Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27460 492 / 4e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 255 / 3e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02150 253 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 223 / 1e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 218 / 1e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 216 / 2e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 211 / 6e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G01990 198 / 4e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 174 / 5e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80270 151 / 2e-39 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020948 [exp] 315 / 9e-105 AT5G27460 118 / 5e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 266 / 1e-82 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022033 [exp] 247 / 2e-76 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021053 [exp] 238 / 4e-72 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 221 / 1e-65 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 219 / 1e-64 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 214 / 3e-63 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 213 / 2e-62 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 209 / 3e-61 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160100 [exp] 560 / 0 AT5G27460 532 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 273 / 1e-85 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G050300 [exp] 253 / 2e-77 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 245 / 2e-74 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 234 / 1e-70 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 230 / 3e-69 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 229 / 7e-69 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 221 / 6e-66 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 221 / 1e-65 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G194400 [exp] 217 / 3e-64 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008724 pacid=23161950 polypeptide=Lus10008724 locus=Lus10008724.g ID=Lus10008724.BGIv1.0 annot-version=v1.0 ATGTCGATTGCCCTGATCTTCCTCTTCCAAACTGGACCAGAACGCCTAGAGACGACGCATATGGCGATTCGCGCCTTTTCTTGCAGTCTCAGACATGCAA AGCTTGAGTCCACCGCGAGGTCGATTTCGTCCGTTGCTCCCGGACGCTATCTGACGGGTCGCCGGAACCCCAAAACCAAGGATGAAGATTCGAAGCTGAG ATTTCCTCACGGAGAAAGTCCGGAGACTATACTCAAAAAGTGGACTGATGAAGGACGAAGATTCGCATTGCCAGAGCTCAAACGTGGATACAAGAAGCTC CTTAGTGCTGAACGCCACCTTGACGCACTCGAGATACTAGAATGGATGGAAGTTCATAGCAAAAGCCAAATGTCAGCGGTGGATTACGCCAATGGGCTCG AGCTAACCATCAGGTTGAGGGGTATAACCAAGGCTGAAGAGTATTTCGAACGCCTGCCAAATTCTGCTTCACGTAGAGCAGCTTTTCTGCCAGTTCTCTC TACGTATGTCAAACAACGAGACACGATTAAGGCAGAGGCATTCATGGTGAAATTGAATGAGCTGGGGCTGATTCTGGATGCTCATCCTTTCAACGAGATG ATGAAACTATACATGGCTACATTTCAATATGAGAAAGTTCATCTTGTTATCGAACAAATGAAGCAAAATCAGATCCCCAGAAATGTGCTGTCTTATAATC TCTGGATGTGTGCCTGTGGTGAGATATCTGATGTCGAGAAAGCTGAGATGGTGTACATGGAAATGGTGGATGATCAAGGTGTGGAAGTTGGATGGAGTGC TCTCTGTTGCCTGGCTAATGTATACATCAAAGCAGGTCTTGTTGACAAAGCTCTTGTGGCTATGAGGAATGCAGAGAAGAAGCTATCTCCAAGTAAACGC CGTGGTTATTTCTTCCTCATGACGAATTATTCGTCTCTGAAGAATAAAGAAGGTGTTCTACGACTTTGGGAAGCTAGTAAAGCAGCGAAAGGAAGAATCA CCTGTGCTGATTACATGTGTGTATTGTCTTGCTTGGTGAAGTTGGGGGACGTTTCAAAAACCGAGAGAGTGTTTACCGAATGGGAGTCGAGTTGTCGTAA CTACGATATCAGAGTCCCTAATGTACTTCTAGGAGCATATGTTCGGAGCGGTATGATACAAAAGGCTGAATCTTTACATCTCCACACCATTCGGAAAGGC GGAAACCCGAATTACAAAACATGGGAGATCCTGATTGAAGGTTGGGTAAAATCGGGAGAGATGGACAAGGCCATTAGTGCCATGAAGAGTGGGTTAAGTA GGCTGAACGATTGCCATTGGAGACCTTCAGAGAACATCTTGATGGCAGTTGCAGAGTTCTATGAGAAACAAGGGAATCTGAAAGATGCAAGTGACTATCT TAGGATTATCCATCATTTGGGTATCTCAAGCTTACCATTGTATAAACTACTCCTCAGATTCCACCATTCGGCTTCGAAACCAGCTTCTTGGATCCTTGAT ATGATGAAGAAGGATGAAATTCAGATGGATGAGGAGACATTATCCTTAGTTCAAGCCATGAAATGA
AA sequence Show only first row Show all	>Lus10008724 pacid=23161950 polypeptide=Lus10008724 locus=Lus10008724.g ID=Lus10008724.BGIv1.0 annot-version=v1.0 MSIALIFLFQTGPERLETTHMAIRAFSCSLRHAKLESTARSISSVAPGRYLTGRRNPKTKDEDSKLRFPHGESPETILKKWTDEGRRFALPELKRGYKKL LSAERHLDALEILEWMEVHSKSQMSAVDYANGLELTIRLRGITKAEEYFERLPNSASRRAAFLPVLSTYVKQRDTIKAEAFMVKLNELGLILDAHPFNEM MKLYMATFQYEKVHLVIEQMKQNQIPRNVLSYNLWMCACGEISDVEKAEMVYMEMVDDQGVEVGWSALCCLANVYIKAGLVDKALVAMRNAEKKLSPSKR RGYFFLMTNYSSLKNKEGVLRLWEASKAAKGRITCADYMCVLSCLVKLGDVSKTERVFTEWESSCRNYDIRVPNVLLGAYVRSGMIQKAESLHLHTIRKG GNPNYKTWEILIEGWVKSGEMDKAISAMKSGLSRLNDCHWRPSENILMAVAEFYEKQGNLKDASDYLRIIHHLGISSLPLYKLLLRFHHSASKPASWILD MMKKDEIQMDEETLSLVQAMK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10008724 [exp]	0	1
AT4G03415			Protein phosphatase 2C family ...		Lus10039802 [exp]	7.7	0.7699
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10038276 [exp]	15.2	0.7307
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	18.1	0.7434
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	21.7	0.7625
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10034671 [exp]	22.1	0.7358
AT3G55080			SET domain-containing protein ...		Lus10023469 [exp]	29.7	0.7230
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	36.6	0.7211
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040559 [exp]	43.5	0.7306
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	51.2	0.7142
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10017267 [exp]	58.8	0.7198

Compare expression of checked genes

Lus10008724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.