Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36950 442 / 2e-152 DEGP10 DegP protease 10 (.1) AT1G65640 369 / 4e-126 DEGP4 DegP protease 4 (.1) AT1G65630 367 / 1e-123 DEGP3 DegP protease 3 (.1) AT3G16550 294 / 7e-96 DEGP12 DEGP protease 12 (.1) AT3G16540 291 / 5e-94 DEGP11 DegP protease 11 (.1) AT5G40200 291 / 7e-94 DEGP9 DegP protease 9 (.1) AT5G40560 283 / 1e-92 DEGP13 DegP protease 13 (.1) AT2G47940 257 / 2e-80 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT1G51150 178 / 2e-54 DEGP6 DegP protease 6 (.1) AT5G54745 166 / 9e-50 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024525 [exp] 681 / 0 AT5G36950 764 / 0.0 DegP protease 10 (.1) Lus10014524 [exp] 297 / 6e-96 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10032163 [exp] 296 / 2e-95 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10005931 [exp] 171 / 5e-49 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10008781 [exp] 56 / 3e-08 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10037815 [exp] 49 / 3e-06 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10007262 [exp] 45 / 6e-05 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Lus10022234 [exp] 43 / 0.0004 AT3G27925 623 / 0.0 DegP protease 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G079900 [exp] 478 / 8e-167 AT5G36950 857 / 0.0 DegP protease 10 (.1) Potri.015G073100 [exp] 293 / 9e-95 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.012G077900 [exp] 287 / 2e-92 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.002G207200 [exp] 262 / 5e-82 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.014G135200 [exp] 257 / 2e-80 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.001G348800 [exp] 55 / 5e-08 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.013G018300 [exp] 52 / 4e-07 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.004G129200 [exp] 50 / 2e-06 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.011G083300 [exp] 45 / 6e-05 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [flax] [poplar] Peptidase_PA PF00089 [flax] [poplar] Trypsin Trypsin
Representative CDS sequence Show only first row Show all	>Lus10008726 pacid=23169021 polypeptide=Lus10008726 locus=Lus10008726.g ID=Lus10008726.BGIv1.0 annot-version=v1.0 ATGTGGTGCCCTTCGATTCGAGCTGCGCGGAAGCTTTGCTCCTTCTCCATTATCAACCACCCTTGTCTTAGACTAAGGCGAGGTACTTTCTTATTTGTAT CGCCCAAGCTCGTACCATTGTCAACCAACAACCATTCAGCAGCAGCAGCAGCGGCAATAGTTCCATTCCCGCCTTTCCTTAGCTGTCGCCACCATCTATG TTATTCCACTTCTGCATCCGACGAGCCATCATGGAGCTGCAGTTCAAATGTGGCCGTCGGACTGGCTTTGGTATCCGTCGTCAAGATCTTCACGGTCTTC AGCACCCCCAATTACATCCTTCCGTGGCAGAATAAATCCCAGCGTGAAACCACAGGCTCGGGGTTCGCTATTCCTGGGAAAAGGATTCTTACAAATGCTC ATGTGGTGGCTGATCACACTTTTGTAATGGTGAGGAAGCATGGCTCCCCTACCAAATATAAAGCACAAGTTCAAGTTGTTGGGCACGAATGTGATTTAGC AGTTCTGGTTGTTGAAAATGACGAGTTTTGGGATGGAATGACTTCCTTAGAGCTCGGTGAAGTCCCGTGTCTACAGGAATCCGTCTCAGTTGTTGGCTAT CCCCAAGGTGGGGACAATATTTCTGTTACCAAGGGTATTGTCTCCAGAGTCGAACCGACTCAGTATGTCCACAGTGCTACCAATTTGATGGCAATACAGA TTGATGCTGCTATTAATCCTGGGAACAGCGGCGGTCCTGCAATAATGGGTGAAAAGGTTGTTGGCGTAGCATTTCAAAACCTTTCAGGTGCTGAGAATAT CGGATATATCATCCCAGTTCCTATAATTAGGTCATTTATATCAAGTTGGGAAGAAAATGGAGAGTATGTTGGATTCTGCTCCCTGGGTTTGTCATGCCAG CCAACTGAAAATGTTCAGCTCAGGAAGCACTTTGGAATGTCGCCTGGGATGACTGGAGTACTTGTAAGCAAAATTAATCCTCTCTCGGATGCACACCAGA TTTTGAAAAAGGATGATATTCTACTTGCATTTGATGGAGTCCCTATCGCAAGTGATGGAACAGGTAGTTACGATTATTTAACTCATATTTCTTAG
AA sequence Show only first row Show all	>Lus10008726 pacid=23169021 polypeptide=Lus10008726 locus=Lus10008726.g ID=Lus10008726.BGIv1.0 annot-version=v1.0 MWCPSIRAARKLCSFSIINHPCLRLRRGTFLFVSPKLVPLSTNNHSAAAAAAIVPFPPFLSCRHHLCYSTSASDEPSWSCSSNVAVGLALVSVVKIFTVF STPNYILPWQNKSQRETTGSGFAIPGKRILTNAHVVADHTFVMVRKHGSPTKYKAQVQVVGHECDLAVLVVENDEFWDGMTSLELGEVPCLQESVSVVGY PQGGDNISVTKGIVSRVEPTQYVHSATNLMAIQIDAAINPGNSGGPAIMGEKVVGVAFQNLSGAENIGYIIPVPIIRSFISSWEENGEYVGFCSLGLSCQ PTENVQLRKHFGMSPGMTGVLVSKINPLSDAHQILKKDDILLAFDGVPIASDGTGSYDYLTHIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008726 [exp]	0	1
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	1.0	0.9365
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	3.5	0.9267
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10007993 [exp]	4.9	0.9017
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	7.1	0.9147
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	7.3	0.9141
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10036506 [exp]	8.2	0.9155
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10041301 [exp]	8.4	0.8991
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	9.5	0.9231
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10026334 [exp]	10.4	0.8927
AT4G10320			tRNA synthetase class I (I, L,...		Lus10041706 [exp]	13.3	0.8988

Compare expression of checked genes

Lus10008726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.