Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36950 285 / 2e-93 DEGP10 DegP protease 10 (.1) AT1G65630 187 / 6e-56 DEGP3 DegP protease 3 (.1) AT3G16550 157 / 2e-45 DEGP12 DEGP protease 12 (.1) AT5G40560 140 / 3e-39 DEGP13 DegP protease 13 (.1) AT3G16540 140 / 9e-39 DEGP11 DegP protease 11 (.1) AT5G40200 124 / 1e-32 DEGP9 DegP protease 9 (.1) AT2G47940 118 / 1e-30 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT1G65640 108 / 2e-27 DEGP4 DegP protease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024525 [exp] 365 / 3e-125 AT5G36950 764 / 0.0 DegP protease 10 (.1) Lus10032163 [exp] 123 / 3e-32 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10014524 [exp] 123 / 3e-32 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10010350 [exp] 53 / 9e-08 AT1G78280 1211 / 0.0 transferases, transferring glycosyl groups (.1) Lus10036482 [exp] 51 / 3e-07 AT1G78280 1194 / 0.0 transferases, transferring glycosyl groups (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G079900 [exp] 300 / 1e-99 AT5G36950 857 / 0.0 DegP protease 10 (.1) Potri.015G073100 [exp] 141 / 6e-39 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.012G077900 [exp] 139 / 5e-38 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.002G207200 [exp] 118 / 2e-30 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.014G135200 [exp] 117 / 3e-30 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.002G099400 [exp] 42 / 0.0002 AT1G78280 1234 / 0.0 transferases, transferring glycosyl groups (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008727 pacid=23169013 polypeptide=Lus10008727 locus=Lus10008727.g ID=Lus10008727.BGIv1.0 annot-version=v1.0 ATGAAGAAACCAAATGAGGCAGCTTTAGTCGCAGTTTTGAGGGGTGGGCAACAGCATGAGTTCAGAATCACCGTCAGACCACTGCAGCCACTGGTACCAG TTCATCAGTTTGATAAGCTTCCGAGTTATTACATATTTGCTGGGTTGGTATTTGTTCCACTCACCCAGCCATTCCTACATGAATATGGAGAAGATTGGTA TAATGTTTCTCCTCGTCAATTGTGCGAGCGTGCGTTGAGGGAGCTTCCAAAAAAGGCGGGTCAACAACTTGTCATTCTCTCACAGGTACTGATAGATGAT ATAAATACAGGATACGAGCGTCTTGCAGAACTACAGGTGAAGAAAGTGAACGGGGTAGAGGTTGAGAACCTGAAGCAGCTGAGGAAAGTGGTTGAGGAGT GCAATGAAGAGTTTGTGAGATTTGATTTGGATGAGGAAAGGGTGATGGTGGTTAGCTATGAGTGTGGGAAAGCAGCTACTTCCAGAATATTGAAGCGTCA TAGAATACCTAGCGCTATGTCCACTGATCTTGCTGAACAACAGGAAGAGTTTCAACGTCAGTATGACGGGAAAAAGGCGGGTTTGCTGATGTTGCTGGCA GGGTTAGCTGATGGTTGGCCGGCCAGGAGTTCATGGACAATTGACCAGTTAATGATGAAATACGGTGATAAAGCTTTTAACTTTTAA
AA sequence Show only first row Show all	>Lus10008727 pacid=23169013 polypeptide=Lus10008727 locus=Lus10008727.g ID=Lus10008727.BGIv1.0 annot-version=v1.0 MKKPNEAALVAVLRGGQQHEFRITVRPLQPLVPVHQFDKLPSYYIFAGLVFVPLTQPFLHEYGEDWYNVSPRQLCERALRELPKKAGQQLVILSQVLIDD INTGYERLAELQVKKVNGVEVENLKQLRKVVEECNEEFVRFDLDEERVMVVSYECGKAATSRILKRHRIPSAMSTDLAEQQEEFQRQYDGKKAGLLMLLA GLADGWPARSSWTIDQLMMKYGDKAFNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008727 [exp]	0	1
AT1G70350			unknown protein		Lus10029157 [exp]	3.9	0.8700
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016407 [exp]	3.9	0.8928
AT5G57370			unknown protein		Lus10006974 [exp]	4.6	0.8742
AT4G24730			Calcineurin-like metallo-phosp...		Lus10019465 [exp]	11.5	0.8591
AT3G53220			Thioredoxin superfamily protei...		Lus10013827 [exp]	12.4	0.8152
AT2G41945			unknown protein		Lus10021080 [exp]	12.9	0.8812
AT3G53270			Small nuclear RNA activating c...		Lus10008478 [exp]	16.1	0.8666
AT1G28100			unknown protein		Lus10002573 [exp]	17.2	0.8245
AT3G01435			Expressed protein (.1)		Lus10003331 [exp]	21.0	0.8205
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	23.5	0.8136

Compare expression of checked genes

Lus10008727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.