Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57860 47 / 6e-06 GIG1, OSD1, UVI4-LIKE OMISSION OF SECOND DIVISION, GIGAS CELL 1, UV-B-insensitive 4-like (.1) AT2G42260 46 / 1e-05 PYM, UVI4 POLYCHOME, uv-b-insensitive 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024522 [exp] 310 / 8e-106 AT2G42260 131 / 5e-37 POLYCHOME, uv-b-insensitive 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050300 [exp] 64 / 1e-11 AT2G42260 147 / 2e-43 POLYCHOME, uv-b-insensitive 4 (.1) Potri.006G057800 [exp] 63 / 2e-11 AT2G42260 148 / 1e-43 POLYCHOME, uv-b-insensitive 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008728 pacid=23169012 polypeptide=Lus10008728 locus=Lus10008728.g ID=Lus10008728.BGIv1.0 annot-version=v1.0 ATGCCTGAATCCAGAGACAGATTCGTGAGGGAAGTCGACTTCGCTGCCCTTTTTGCCCGTCAACGTGCAGCGAGGATGTACTCCGATGAGATGGAGGTGG CTTTGTACGGATCTCTACGCCCACAGCCGGAGCCGGTGGAGCGATCTGGTACCATATTTGGACCTGGGTTTCGGCCAACCAGAAATGGTAGGAATTGTCA CCCATCCAGAGGGATTGAAAATACTCCCATCGGGACAGCCAGGCGTGAGAATTGGAGCCCTCGCCGCCGCAGACGCACTATCTTGCCTTCTTGGTACCCA AGGACTCCTCTTCATGACATTTCTTCCATTACCCGGGTTTGTGGGAAGTCTCGGTATATTCTGATCTGGAAAGAAAATTTGGGGTTTCCCGAGTATATTT CGTTTGGGTTATATAAGATTGTTTTCCATATGATAACCTTTTTTATCTGTGCTCTTTCCCCTGTTATGACTGCGCTGAGTTCTGCTCTTTCTTTTGTTTT AGTCTCAGCAGATCAGGTGGCTTTGATCATGGTGTCCTTGCTGATGGCCATGGAAAGGCGGAGAGGACATTTGGGAGACGTTGAGGGCCACGAACTTGGA AGCCCAGTTATAGCAGGTATCAGAGGTTCTGACTCTTTCGCAACTCCACTGGTTGAGACAAAAAAGTTCATGTCTCCATCTACAGCAACCGGATTCAGAT GCAGTCGTCGCCCTAAACTTGGTAAACTTCCGAAGATTATCAATGAGATTGCAAATCAACCATCCCCAGGAACAGAATGGTTAACACCGGAGAAAAAGCT ACTGAACTCCATTGACAAAGTTGGGAAAGTAGTGAAGGAGGAATTGGAGAAGCTCAAGAGGACCCCTGCTGCGAAAAGGGAAGAAAGGGCGAGAAGGGTT CGGACTCTGATGTCCATGCGGTGA
AA sequence Show only first row Show all	>Lus10008728 pacid=23169012 polypeptide=Lus10008728 locus=Lus10008728.g ID=Lus10008728.BGIv1.0 annot-version=v1.0 MPESRDRFVREVDFAALFARQRAARMYSDEMEVALYGSLRPQPEPVERSGTIFGPGFRPTRNGRNCHPSRGIENTPIGTARRENWSPRRRRRTILPSWYP RTPLHDISSITRVCGKSRYILIWKENLGFPEYISFGLYKIVFHMITFFICALSPVMTALSSALSFVLVSADQVALIMVSLLMAMERRRGHLGDVEGHELG SPVIAGIRGSDSFATPLVETKKFMSPSTATGFRCSRRPKLGKLPKIINEIANQPSPGTEWLTPEKKLLNSIDKVGKVVKEELEKLKRTPAAKREERARRV RTLMSMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10008728 [exp]	0	1
AT3G15080			Polynucleotidyl transferase, r...		Lus10011026 [exp]	1.7	0.9238
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	2.8	0.9174
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10007629 [exp]	4.4	0.9317
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	4.5	0.9267
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10008424 [exp]	6.2	0.8900
AT1G70350			unknown protein		Lus10030618 [exp]	6.3	0.9033
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	8.4	0.9140
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	9.2	0.9113
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10009236 [exp]	12.6	0.8894
AT5G56900	C3HZnF		CwfJ-like family protein / zin...		Lus10021589 [exp]	14.4	0.8981

Compare expression of checked genes

Lus10008728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.