Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65470 565 / 0 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003491 [exp] 977 / 0 AT1G65470 635 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10004453 [exp] 973 / 0 AT1G65470 632 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10024521 [exp] 973 / 0 AT1G65470 647 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G077800 [exp] 747 / 0 AT1G65470 346 / 2e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Potri.002G209795 [exp] 641 / 0 AT1G65470 326 / 2e-100 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12253 [flax] [poplar] CAF1A Chromatin assembly factor 1 subunit A
Representative CDS sequence Show only first row Show all	>Lus10008729 pacid=23169023 polypeptide=Lus10008729 locus=Lus10008729.g ID=Lus10008729.BGIv1.0 annot-version=v1.0 ATGGCGGAACCTCCCAGCGTCCCGATTGGCCTTCCTGCTCCCCCTAAACCTAGCGGTCAGGGTCGGCCTGCCAAATCTCTCAAGCGGAAGCGACAGTCGC CGTCCCCTTTGTTTGTCAACTTGACACCTGACCAGAAAGTTTCTAAGGCTCAGATGCTTCGCGATGAAATGAGCTCCCTCATTCTTTATTACCACGAAAT CCTGAGTAACAAGGCGGGCTTTGGTTGCGGCCTTGATTTGTCAGTAAGTGAGTGCAAGACAGTGAATGGAATGGTGGCTCTGTTGATTGAGGAGAGTCAG CTCCCGCTTAAAAAGCTGATCCAGCAGTTAAATAGCAAATTGGAGACGGCTCCACTGAAGAACGAAACCACATCAACACTGGCCGGAGTTAAGAGCGTAG TGTTGCTTGTGGGTCAAAGAATCATGTACGGGGTTCCCAATTTAGATGCCGATGTTCTAGAGGATGAGACCCCGTCTTGTCTGTGGTGCTGGGAGACAAG AGACCTAAAGTTGATGCCCAAGTCTTTACGCAGTGCTCTCAAAGTTAGACGTGAATGTCGAAGAAGGATCAATGAGAGAATTACAGCTGTGTCTGCCATG CTTGCAGTACTTCAAAAGCCGGAGACCGATGAAAATTACAGAAGTGATTTGATGAAAGCAACAGAGAAGCTTGGCAAAGCATTCGGAGAAACTGACATTC GGTTGTACATGGATGGGATGTTGCAGAAGAATGGTGCAGAGATGGCTGATAACGAAGTCAAGAGAGACGAAAAGTTACTCGTTAGGCAGCTTGAGAAAAA TAAGCGGGCATCTGAAAAGGAGAAAAAGAGAATAGACATCGAGGTTCAGAAGGAAAAGCAACGCATGGATAAGGAGCGAAAGAAACTACAAGAGGAAGCT GAAAAGGTTGAAAAGCGTCGTGAGAAAGAAGCTTCAGAATTGCAGAAGCAGTCGAGAAAAAAGCAAGATGAAGCTGACAAGGAGAAAAGGCGGCGCAAGA AGGAAGAAGCTCAGTTGAAAAGTCATAGAGCTGTCCGGAAACAAGCTTCAATAATGGAGCGGTTCCTTCAACTGAAAAAAACTGATTCGAAATGCCAAAA CGACCAATCTTCAACTGATGTTAGTTCCTTTAAACTGTCAGCCAATGTTAATGATGGGATATCTACTGCAGTCACGCAGGAGATGGACATTACTTTCTCA TCAAATGAGGGTATTGGAATTGATGACATTCGCAAGTGTCATATATCTTCCTGGCGTCATCCTGATCAGTCTCTTCATTCAAGCAGAAAACGTCATTGGA GTTTACGGCAGAAACCAAAGAGTAATTTGATTAAGGAGCTCAAGCTAACTACTTATAGACAAGCGGACAATGATGATGAATCATGTACAGAGAAACTTGC AAGTGCATGTGAAGAGCTTGCTTCTGATGATGGTTCGTCCTTTGCCATTTCTAGCAAATCTCTTACGGATGTTAAAAAGTGCCAGCGGAGAAAACAGTTG CTGCAGTTTGATAAGTGCCATCGACCTGCATTTTATGGCATTTGGCCTAAGAGAAGTAGTGTTGTTGGACCTCGCCATCCTCTGAGGATGGATTCTGAAC TAGATTACGATGTTGACAGCGATCAAGAATGGGAAGAGGAGGATCCAGGAGAAAGCCTCTCTGATTGTGACAAGGATGATAAAGCAGAATGTTTAGAGGG GAGCCCAAGAGCTGATGACGAAAAGGAGTGTGAAGATGGTTTTTTTGTACCTGATGGGTATTTCTCAGAAAATGAGGGAGTACAAATTGATAGGATGGAC ATTGATATCTCTATTGATGAAGCAAAGAGTTCGCCAAGTTGTACCCAAGACTCTGAGAATGGGGAGTTCTATGCTCTGATTCAAAAGCAGAAGCATCTAC ACAAGTTTACTGAAACTGCACTCAGGAACAATCAGCCTTGTTGTATATTGAATATAGTCCACGAGAAGGATATATCAACAGGATACGATGATCTCAGTGG AAATTCGAAGTTTGAAAAAATATGCTTAGAGGGTCTTAGTATGCGTGCATTCCCTGGTGGAAAACCAATCGAAATATCAATTGAAAGCTTTCAAGCAGAG GATCAGGATGTTTGCTTATCCAATGGCAAAGTAATGTCTAAACGTACTTCATCCTCAACGTCTGCAGTGCAAGAATTGGATATGCCGGACGTTATATCTG CTGTCCAGTCGTGCTCTCAAAGTATTGGTAAAATTATTGAAACCTTGCAACAGAAGTTTCCTACATTGTCGAAGTCTCAACTGAAAAGCAAAGTTCGTGA GATCTCTGATTTTGTGGATAACAGATGGCAGGTTAGTAGTAAAAAATAA
AA sequence Show only first row Show all	>Lus10008729 pacid=23169023 polypeptide=Lus10008729 locus=Lus10008729.g ID=Lus10008729.BGIv1.0 annot-version=v1.0 MAEPPSVPIGLPAPPKPSGQGRPAKSLKRKRQSPSPLFVNLTPDQKVSKAQMLRDEMSSLILYYHEILSNKAGFGCGLDLSVSECKTVNGMVALLIEESQ LPLKKLIQQLNSKLETAPLKNETTSTLAGVKSVVLLVGQRIMYGVPNLDADVLEDETPSCLWCWETRDLKLMPKSLRSALKVRRECRRRINERITAVSAM LAVLQKPETDENYRSDLMKATEKLGKAFGETDIRLYMDGMLQKNGAEMADNEVKRDEKLLVRQLEKNKRASEKEKKRIDIEVQKEKQRMDKERKKLQEEA EKVEKRREKEASELQKQSRKKQDEADKEKRRRKKEEAQLKSHRAVRKQASIMERFLQLKKTDSKCQNDQSSTDVSSFKLSANVNDGISTAVTQEMDITFS SNEGIGIDDIRKCHISSWRHPDQSLHSSRKRHWSLRQKPKSNLIKELKLTTYRQADNDDESCTEKLASACEELASDDGSSFAISSKSLTDVKKCQRRKQL LQFDKCHRPAFYGIWPKRSSVVGPRHPLRMDSELDYDVDSDQEWEEEDPGESLSDCDKDDKAECLEGSPRADDEKECEDGFFVPDGYFSENEGVQIDRMD IDISIDEAKSSPSCTQDSENGEFYALIQKQKHLHKFTETALRNNQPCCILNIVHEKDISTGYDDLSGNSKFEKICLEGLSMRAFPGGKPIEISIESFQAE DQDVCLSNGKVMSKRTSSSTSAVQELDMPDVISAVQSCSQSIGKIIETLQQKFPTLSKSQLKSKVREISDFVDNRWQVSSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10008729 [exp]	0	1
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10011840 [exp]	1.4	0.9664
AT1G26330			DNA binding (.1.2)		Lus10000645 [exp]	2.2	0.9667
AT4G02110			transcription coactivators (.1...		Lus10010017 [exp]	5.5	0.9517
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	5.5	0.9606
AT3G42660			transducin family protein / WD...		Lus10021720 [exp]	6.3	0.9591
AT5G43530			Helicase protein with RING/U-b...		Lus10041156 [exp]	8.0	0.9470
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	8.1	0.9422
AT4G14368			Regulator of chromosome conden...		Lus10030999 [exp]	9.5	0.9299
AT3G16730		HEB2	hypersensitive to excess boron...		Lus10009771 [exp]	10.0	0.9433
AT1G67040			unknown protein		Lus10033565 [exp]	10.8	0.9445

Compare expression of checked genes

Lus10008729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.