Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01200 187 / 2e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 128 / 1e-33 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 126 / 9e-33 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 100 / 3e-24 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 89 / 3e-20 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G45760 52 / 7e-08 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) AT5G23950 46 / 6e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G55470 42 / 0.0001 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G61190 41 / 0.0003 BAP1 BON association protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002155 [exp] 460 / 1e-165 AT4G01200 224 / 7e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 126 / 8e-34 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003570 [exp] 118 / 1e-30 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 116 / 7e-30 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10020938 [exp] 79 / 4e-18 AT2G39650 54 / 2e-09 Protein of unknown function (DUF506) (.1) Lus10030501 [exp] 54 / 4e-08 AT2G40815 168 / 4e-49 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10012856 [exp] 49 / 4e-06 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10024505 [exp] 46 / 1e-05 AT2G45760 58 / 3e-10 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10008004 [exp] 45 / 1e-05 AT2G45760 56 / 1e-09 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166400 [exp] 228 / 2e-74 AT4G01200 211 / 4e-68 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 123 / 3e-32 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 123 / 5e-32 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 116 / 3e-30 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 114 / 2e-29 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G458101 [exp] 61 / 1e-11 AT2G13350 74 / 1e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G108300 [exp] 51 / 1e-07 AT2G45760 59 / 7e-11 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.010G024200 [exp] 52 / 2e-07 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G064900 [exp] 48 / 3e-06 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 47 / 8e-06 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10008731 pacid=23169018 polypeptide=Lus10008731 locus=Lus10008731.g ID=Lus10008731.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAATCCAAGATCTTGGAGATCAATCTCATCTCCGCCCAAGGCCTCAAACCTCCTTCTTCCAAGCTCCGCCAGCTCCACACCTACGCCTTAG TCTGGATCAACGCCTCCACCAAGCTCCGCTCTCAAATCGATCGCGTCGGCGGCCAGAACCCAACCTGGAACGACCGCTTTCTCTTCAAGGTCTCCCCCGC CTTCCTCTCCAGCGAAACCTCCGGCGTCTCCGTCGAGATCTACGCCGTCGGCTACCTCCGCGACACCGTCATCGGCACTGTCAGATTTCTCCTCAGCAAC CTCTCCCTCTCCTCCTCTCCGGTCGACACACCTTCCTTCACCGCTCTCCAGATCCGCCGCCCTGTCTCAGGCCGCTGCCACGGTGTCCTCAATGTAGGCG CCACTGCCATCGACGCATCCGATTTCGCTGGGTGGAAGGGAGAATCGGCGATCGGATACCGCGACTTAATGGGGGACGGAGGCAGCAAAACTGATCGACG GAGTAGCCGCCGCCTCCGCCGTCCCAATAGGGTTTCTTCCAAAGAGTCGATTTCGTCGTTGCCGGAAGATCGGGAGGGCAGTTCTTGCTGCTACGAGTCC GGTGAGCTGTCCGATGGAACTGATTCGACTACCTCTTCGTCTTCCAACGCGTCGGCAGTGCTGAAGGATTTGAACAAGCTTCAACAATTGGCGGGAAACA GTCACCTCAGGGCTTGCTCAGACGGCGGAATGCTTTGCGGGTTGCTGATGCAGCGGAAGCTCCGTTTCTGCAAGTCCGACCCGAATCTGAGAGACCCGGA CTACAGTGGGTCCGAAAAGGAGAACTAA
AA sequence Show only first row Show all	>Lus10008731 pacid=23169018 polypeptide=Lus10008731 locus=Lus10008731.g ID=Lus10008731.BGIv1.0 annot-version=v1.0 MEEESKILEINLISAQGLKPPSSKLRQLHTYALVWINASTKLRSQIDRVGGQNPTWNDRFLFKVSPAFLSSETSGVSVEIYAVGYLRDTVIGTVRFLLSN LSLSSSPVDTPSFTALQIRRPVSGRCHGVLNVGATAIDASDFAGWKGESAIGYRDLMGDGGSKTDRRSSRRLRRPNRVSSKESISSLPEDREGSSCCYES GELSDGTDSTTSSSSNASAVLKDLNKLQQLAGNSHLRACSDGGMLCGLLMQRKLRFCKSDPNLRDPDYSGSEKEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01200			Calcium-dependent lipid-bindin...		Lus10008731 [exp]	0	1
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10001786 [exp]	1.0	0.8476
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034664 [exp]	2.4	0.8454
AT2G15910			CSL zinc finger domain-contain...		Lus10023841 [exp]	5.5	0.8209
AT1G78190			Trm112p-like protein (.1)		Lus10017505 [exp]	5.8	0.7867
AT1G70280			NHL domain-containing protein ...		Lus10012989 [exp]	6.9	0.8245
AT1G49850			RING/U-box superfamily protein...		Lus10002113 [exp]	7.3	0.8266
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	8.1	0.8424
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	10.4	0.8321
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Lus10013089 [exp]	12.4	0.8051
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10032183 [exp]	14.7	0.7907

Compare expression of checked genes

Lus10008731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.