Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01210 1172 / 0 glycosyl transferase family 1 protein (.1) AT5G04480 707 / 0 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G15940 44 / 0.0008 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002154 [exp] 1953 / 0 AT4G01210 1268 / 0.0 glycosyl transferase family 1 protein (.1) Lus10028829 [exp] 690 / 0 AT5G04480 1216 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10017452 [exp] 687 / 0 AT5G04480 1202 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10037523 [exp] 49 / 2e-05 AT1G52420 770 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10011469 [exp] 44 / 0.001 AT1G52420 765 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G092500 [exp] 1398 / 0 AT4G01210 1237 / 0.0 glycosyl transferase family 1 protein (.1) Potri.002G166100 [exp] 1378 / 0 AT4G01210 1168 / 0.0 glycosyl transferase family 1 protein (.1) Potri.008G029400 [exp] 730 / 0 AT5G04480 1237 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.010G232000 [exp] 711 / 0 AT5G04480 1229 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10008732 pacid=23169005 polypeptide=Lus10008732 locus=Lus10008732.g ID=Lus10008732.BGIv1.0 annot-version=v1.0 ATGGGGTCCTTGGAATCCGGCGGCCTTCCACTCAAGCGGGAAGTAGGTCTCTTCCGTTCTCCGTCAGCTGGCAGTAATAATACAACAACCGAGAAGCAGC TGCAGCAGCACCTCTCGTTTCTGCAGAGACCATCCAGATCGAGATTCTCCCGGTTCTTCTTCTTCAAGAAGCTCGATTACCTCCTATGGACGTGCACGGT CGCTGTATTCCTCTTCTTTGTCGTCGTCTTCCAGATGTTCTTGCCCGGCTCCGTCGTTGAGAAGTCGGAGGGTTCCCCTCCCGGCGGTTTTGACTTCGGT GGGGATTTCGCTTATCTGAAACAGATTGGTGGATTGGATTTTGGTGACGATGTTGAGTTCAAGCCTTCCAAACTGCTGGAGAAGTTTGGAATTGAAGCTA AGAGAGAGCTACGTCCTTCTCCCACGTCGAATGAGACTCAATTGCAGCGCTTCGCTTATCGGAAACCTCAGCTCGCATTCGTATTTGGGGATCTATTAGT TGACCCGCAGCAGCTGCTAATGGTTACAGTGGCGACTGCACTGCAGGAGATTGGCTACTCAATTCAGGTTTATTCACTGGACGATGGTCCTGTGCATGGC ATTTGGAAGAGCTTGGGGATTTCAGTAACAATTTTCAAAGATGATCAGACAACAAATATCTTTGCGGATTGGCTCAACTTTGATGGTGTAGTTGTTAGCT CTCTTGAAGCCAAGGAGGTTTTATCCTGTTTCATGCATGAACCTTTCAAATCTGTGCCTCTCATATGGGCCATCCATGAAAGTGCACTTGCTATTCGTTT AAGGCAATATCATTCAAGTGGGCAGATTGAGCTCATTGACGATTGGAAAAAAGTTTTCTACCGTGCTACTGTAATTTTGTTCCCGAACCATGTTCTACCG ATGATGTATGGAGCCTTTGATACTGGAAATTATTATGTTGTACCTGGTTACCCTGCTGAAGTGGGAGGCGTAGACAATTCAATGGCATTATATAATGAAC AACGTATGGAAATGGGTTATGGGTCCAATGACATTGTCATTGTGGTAGCTGGTAGTCAGTTTCTCTATAGGGGTTTGTGGGTGGAGCATGCTCTTGTGCT ACAGGCTCTCCTACCAATCATTTCCGAATTCCCACTTGAAAACAGTTCCAGTTCTCATCTGAAAATCATCGTTTTAAGTGGAAACTCAAACAGCAACTAC AGTATGGCTATAGAGGCTATTGCAGCAAAGTTGAGCTATCCAAATGGTGTTGTGAAACACATAGGTGTCAGTGAAGATGTCAGCAGTGTATTAAATGCAG CTGATCTTGTGGTATATGGTTCCTTCCATGAGGAGCAGTCCTTTCCAGAAGTTGTGATGAAAGCAATGTCCATGGGAAAGCCTGTCATTGCCCCAGACAT TGCTGTGATTAGGAAATATGTGAATGACAGGGTTAATGGGTATCTTTTCCCAAAAGACAAGATCAAGGTTCTAACTGAAATTCTGTTGGAACTGATCTCA AGGGGGGAATTTTCGCCTCAGGCTCATGAAGTTGCTTCAAAGGGAAAAATCACTGCTAAGAATCTGTTGGTTTCAGAAACAATTGAAGGCTATGCTCTGC TACTTGAAAATATTCTCAAACTTCCATCAGAAGTTACACCTCCACGAGCTGTTATGGAAATCCCTCCTATATTGAAAGAAGAATGGCGGTGGCATCTATT TCAGCCACTTTTAAATTCTATGACAGAAGACAGAACACTGAAGAGTTCCAGGTTTTTAGATAAGTTTGAGGAGCGGTGGAACGATACACATGGACAGGGT TCTGGTTCTGTAGCTGCTCCTGATGACCCATTTCTCTATGCAATCTGGGCGGAACAGAAAAATGATCAATTACTTTATGTTAGAAAGAGAAGAGAAGAAG AAGAACTTAAAGACCGGACTGACCAACCTCGTGGAACATGGGAAGAAGTATATCGGAATGCTAGAAGGGCTGACCGGATTAGGAATGACTTACATGAAAG GGATGAAGGAGAACTAGAGAGGACAGGTCAACCTCTGAGTATTTATGAACCATACTTTGGAGAAGGGACATGGTCTTTTCTGCACAATCAGTCACTTTAT CGCGGCATATGCTTGTCCACAAAAGGTAAAAGACCTATGACAGACGACATCGATGCACCATCTCGTCTACAACTTCTTAATGACCCTTACTACCGGGATA CCCTCGGTGAATATGGAGCATTTTTCGCAATTGCAAATCGGTTTGACCGTGTTCATAAGAATGCTTGGATAGGTTTCCAGTCTTGGAGAGCTACTGCAAG GAAGGAATCTTTGTCTATGGTTTCTGAAAAGGCATTGTTAGATGCGATCCAAAAACGGAAGTATGGAGATGCACTTTACTTTTGGGTTCGCTTGGACACG GATCCAAGAAACCCCATGCAGCAGGATTTTTGGACATTCTGCGACGCCATAAATGGAGGAAATTGCAAGTTAGCTTTCTCAAAGGCCATGCGCAAGATGT ATGGTATCAGTGAGGATCTTGAATCCCTGCCACCAATGCCTGTAGATGGTGATACATGGTCCGTCATGTTTAGTTGGGCTTTGCCAAGTAGATCGTTCCT CGAGTTTGTAATGTTCTCAAGAATGTTTGTAGACTCACTGGATGTAGAAATGTACGATGAACACCATCAAACTGGCCATTGCTATTTGAGTTTATACAAG GATAAGCATTGCTATTCTCGAATTCTTGAGCTACTCGTTAACGTCTGGGCATACCACAGTGCTAGACAGATGGTTTACATAAACCCAGAGACGGGAACGA TGCAAGAGCAGCATAACATGAAGAACAGGAGAGGGAAAATGTGGGTGAAGTGGTTCTCGTACATGACGCTAAAGAGCATGGACGCGGAGTTAGCGGAGGA GGCGGATTCGGACCACCCTAGGAGGAGGTGGCTGTGGCCTTCAACGGGCGAGATATACTGGGAAGGCATGTTTGAGAAGGAGAGAAAAATGATGAATCAG CAGAAAGAGAAGAGGAAGCAACTAAGCAAGGACAAACTCAGTAGAATGAGGAAGAAACGACGGCAAAAGGCGATAGGTAAATTCGTGAAGCCCCCACCGG AGGATGAGGGGGAGAATTCCACTATGTCGGATGTCCGGAGATTGTTATAG
AA sequence Show only first row Show all	>Lus10008732 pacid=23169005 polypeptide=Lus10008732 locus=Lus10008732.g ID=Lus10008732.BGIv1.0 annot-version=v1.0 MGSLESGGLPLKREVGLFRSPSAGSNNTTTEKQLQQHLSFLQRPSRSRFSRFFFFKKLDYLLWTCTVAVFLFFVVVFQMFLPGSVVEKSEGSPPGGFDFG GDFAYLKQIGGLDFGDDVEFKPSKLLEKFGIEAKRELRPSPTSNETQLQRFAYRKPQLAFVFGDLLVDPQQLLMVTVATALQEIGYSIQVYSLDDGPVHG IWKSLGISVTIFKDDQTTNIFADWLNFDGVVVSSLEAKEVLSCFMHEPFKSVPLIWAIHESALAIRLRQYHSSGQIELIDDWKKVFYRATVILFPNHVLP MMYGAFDTGNYYVVPGYPAEVGGVDNSMALYNEQRMEMGYGSNDIVIVVAGSQFLYRGLWVEHALVLQALLPIISEFPLENSSSSHLKIIVLSGNSNSNY SMAIEAIAAKLSYPNGVVKHIGVSEDVSSVLNAADLVVYGSFHEEQSFPEVVMKAMSMGKPVIAPDIAVIRKYVNDRVNGYLFPKDKIKVLTEILLELIS RGEFSPQAHEVASKGKITAKNLLVSETIEGYALLLENILKLPSEVTPPRAVMEIPPILKEEWRWHLFQPLLNSMTEDRTLKSSRFLDKFEERWNDTHGQG SGSVAAPDDPFLYAIWAEQKNDQLLYVRKRREEEELKDRTDQPRGTWEEVYRNARRADRIRNDLHERDEGELERTGQPLSIYEPYFGEGTWSFLHNQSLY RGICLSTKGKRPMTDDIDAPSRLQLLNDPYYRDTLGEYGAFFAIANRFDRVHKNAWIGFQSWRATARKESLSMVSEKALLDAIQKRKYGDALYFWVRLDT DPRNPMQQDFWTFCDAINGGNCKLAFSKAMRKMYGISEDLESLPPMPVDGDTWSVMFSWALPSRSFLEFVMFSRMFVDSLDVEMYDEHHQTGHCYLSLYK DKHCYSRILELLVNVWAYHSARQMVYINPETGTMQEQHNMKNRRGKMWVKWFSYMTLKSMDAELAEEADSDHPRRRWLWPSTGEIYWEGMFEKERKMMNQ QKEKRKQLSKDKLSRMRKKRRQKAIGKFVKPPPEDEGENSTMSDVRRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	0	1
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	2.6	0.8721
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	3.5	0.8593
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	3.6	0.8381
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10042159 [exp]	5.1	0.8709
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	8.5	0.8447
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	8.8	0.8387
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032668 [exp]	9.9	0.8104
AT5G28850			Calcium-binding EF-hand family...		Lus10029614 [exp]	11.0	0.8267
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	11.1	0.8154
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10034941 [exp]	11.2	0.8585

Compare expression of checked genes

Lus10008732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.