Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01220 464 / 1e-164 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) AT4G01770 407 / 5e-142 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1) AT1G56550 405 / 4e-141 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1) AT4G01750 400 / 1e-139 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT2G35610 57 / 1e-08 XEG113 xyloglucanase 113 (.1) AT4G19970 53 / 2e-07 unknown protein AT1G28695 52 / 2e-07 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G70630 47 / 1e-05 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 46 / 3e-05 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT5G44820 44 / 0.0001 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002153 [exp] 615 / 0 AT4G01220 541 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10012650 [exp] 548 / 0 AT4G01220 522 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10032455 [exp] 47 / 1e-05 AT1G28710 259 / 3e-84 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Lus10034422 [exp] 47 / 2e-05 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 45 / 4e-05 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10005034 [exp] 45 / 6e-05 AT2G35610 886 / 0.0 xyloglucanase 113 (.1) Lus10041977 [exp] 45 / 7e-05 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 44 / 8e-05 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036860 [exp] 44 / 0.0001 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G092400 [exp] 469 / 1e-166 AT4G01220 530 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.002G166000 [exp] 459 / 5e-163 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.004G235800 [exp] 52 / 5e-07 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.012G037300 [exp] 49 / 2e-06 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G051600 [exp] 49 / 3e-06 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.008G142200 [exp] 48 / 7e-06 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 46 / 2e-05 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G186800 [exp] 44 / 0.0001 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 44 / 0.0001 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G139800 [exp] 44 / 0.0001 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10008735 pacid=23169027 polypeptide=Lus10008735 locus=Lus10008735.g ID=Lus10008735.BGIv1.0 annot-version=v1.0 ATGACGACGTCTCTGCATCAACGGCCTTTCCAGCCGGCATTCTCCCATCGGTTCCTTCCGGCATCGCTTCACTACTCCAACCTTCCTCAGAGGCCGATTT CACTCTTTAGCCGCGCTGGCCTATTATCCTTGCTCGCTCTCATGCTAATCCTGGGCGTAATCGTGCCTTGGGCGGATATGCCCGGCGGAATCTTCTCCGT GAACACGGAATCCTCAGTTAATCAATGGCGCCACTACACGCTTCCTCAAGCTGCTTCGTTCGTTGCGAAGAACGGTACGTTGATCGTGTGCGCAGTGAGC CAGGCTTACTTGCCGTTTCTTAACAACTGGTTGATCAGCATTTCCAGGCAGAAGCGGCAAGATATGGTACTAGTGATTGCCGAGGATTACGCTACTCTTG ACAAGGTGAACGAGAGGTGGCCTGGCCATGCCGTGCTTATTCCTCCTGCGCTTGATTCACAGCCTGCTCATAAGTTCGGCTCTCAGGGCTTCTTCAATTT CACGGCTAGAAGACCGCAGCATCTCATGAACATTCTGGAGCTTGGGTACAGCGTTATGTACAATGATGTCGATATGGTTTGGTTGGGAGATCCCTTCACA TATTTGCGAGGAGGTCATGATGTCTACTTCACTGATGATATGGCTGCAGTGAAGCCTCTGGATCACTCTCACGACTTACCACCTCCAGGAAAAAAGGGTC GTACTTACATTTGCAGTTGCATGATTTTCCTTCGGCCTACTGATGGAGCAAAATTAGTTATGAAGAAATGGATTGAGGAACTTCAAGCTCAACCTTGGTC GAGAGCAAAGAAGGCAAATGATCAACCTGCTTTTAATTGGGCGTTAATGAAAACTACTGGGCAGGTGGACGTCTACCTGCTTCCGCAGTCAGCATTTCCA ACAGGAGGACTCTACTTCAAGAACAAGACATGGGTGCAAGGAACCAAAGGAAAGCACATCCTCACTCATCAGCAAGCTGCAGAGATCATGAAGAAAGCCA TTGTTGCAGATTCCACAGAAGTCACTGCTCTATGGCAGGTAGGGCAATGCAGTGCCAACTAG
AA sequence Show only first row Show all	>Lus10008735 pacid=23169027 polypeptide=Lus10008735 locus=Lus10008735.g ID=Lus10008735.BGIv1.0 annot-version=v1.0 MTTSLHQRPFQPAFSHRFLPASLHYSNLPQRPISLFSRAGLLSLLALMLILGVIVPWADMPGGIFSVNTESSVNQWRHYTLPQAASFVAKNGTLIVCAVS QAYLPFLNNWLISISRQKRQDMVLVIAEDYATLDKVNERWPGHAVLIPPALDSQPAHKFGSQGFFNFTARRPQHLMNILELGYSVMYNDVDMVWLGDPFT YLRGGHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIFLRPTDGAKLVMKKWIEELQAQPWSRAKKANDQPAFNWALMKTTGQVDVYLLPQSAFP TGGLYFKNKTWVQGTKGKHILTHQQAAEIMKKAIVADSTEVTALWQVGQCSAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10008735 [exp]	0	1
AT4G13990			Exostosin family protein (.1)		Lus10007037 [exp]	10.8	0.8036
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	11.0	0.8217
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	11.1	0.8095
AT4G36660			Protein of unknown function (D...		Lus10026030 [exp]	18.8	0.8012
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	19.0	0.8045
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	19.6	0.7947
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10041363 [exp]	20.2	0.7965
AT4G20960			Cytidine/deoxycytidylate deami...		Lus10030388 [exp]	22.2	0.7147
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10009431 [exp]	23.4	0.7809
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10027368 [exp]	28.8	0.7647

Compare expression of checked genes

Lus10008735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.