Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12230 169 / 2e-52 MED19A unknown protein AT5G19480 157 / 3e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002150 [exp] 257 / 5e-87 AT5G12230 202 / 1e-65 unknown protein Lus10017449 [exp] 221 / 9e-73 AT5G12230 207 / 7e-68 unknown protein Lus10028832 [exp] 213 / 9e-70 AT5G12230 201 / 3e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G193800 [exp] 202 / 1e-65 AT5G12230 173 / 2e-54 unknown protein Potri.009G156200 [exp] 193 / 4e-62 AT5G12230 166 / 2e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008738 pacid=23169015 polypeptide=Lus10008738 locus=Lus10008738.g ID=Lus10008738.BGIv1.0 annot-version=v1.0 ATGGATCCCGATAGCAAGAAGTTTGGAAGCGGACCAAGAGAGTTAACTGGTGCTGTTGATCTTATAAGTCATTTCAAATTGGTCCCACATCATGACTTTT TTTGCAAGAAATCACTTCCTGTATCAATATCAGACACACACTACCTTCATAAAGTGGTTGGAGATACTGAAATCAGAAAAGGGGATGGGATGCAACTGGA TCAGCTTATTCAGAATAATTATCAGCCAAGAGATGGGAATACACGGATACGGCCTTTTGATCTTGATGTGCTTAGGGAGGCCTTCCAACTGAAGGAAAGC ATCCCTGTAGACTTACCTGCTTCTGAGAAGGGGACTCCTACAATCGCTGGGAAATCAAAGAGCGAGTCAAAAGACAAGGAAAGAAAGCATAAAAAACACA AGGATAAAGATAAGGACAAAGATAGAGAGCATAAGAAGCACAAACACCGTCATAAAGACAAAGATAAAGATCGAAGTAAAGATAAAGACAAGGAGAAGAA GAAGGATAAAAGTGGTCATCATGAATCTAGCGCTGATCACACGAGAAAGCATCATGAAAAGAAACGGAAACATGACGGAGATGAAGATCTAAATGATGTA CACAGGCACAAGAAAAGTAAGCAGCAGTCAGGAGCTTGTGCTGTGAGACTTCTGGATTTCTGGTTTGTGCAGGATAGTGTTGAGAAGTGA
AA sequence Show only first row Show all	>Lus10008738 pacid=23169015 polypeptide=Lus10008738 locus=Lus10008738.g ID=Lus10008738.BGIv1.0 annot-version=v1.0 MDPDSKKFGSGPRELTGAVDLISHFKLVPHHDFFCKKSLPVSISDTHYLHKVVGDTEIRKGDGMQLDQLIQNNYQPRDGNTRIRPFDLDVLREAFQLKES IPVDLPASEKGTPTIAGKSKSESKDKERKHKKHKDKDKDKDREHKKHKHRHKDKDKDRSKDKDKEKKKDKSGHHESSADHTRKHHEKKRKHDGDEDLNDV HRHKKSKQQSGACAVRLLDFWFVQDSVEK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12230		MED19A	unknown protein		Lus10008738 [exp]	0	1
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032572 [exp]	2.2	0.8764
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10026955 [exp]	6.7	0.8515
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	9.3	0.8754
AT1G15200			protein-protein interaction re...		Lus10003959 [exp]	10.9	0.8764
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	11.5	0.8699
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10016615 [exp]	12.1	0.8695
AT5G66600			Protein of unknown function, D...		Lus10016786 [exp]	12.6	0.8506
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	13.5	0.8541
AT3G62140			unknown protein		Lus10038035 [exp]	13.7	0.8730
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	17.6	0.8644

Compare expression of checked genes

Lus10008738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.