Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25500 642 / 0 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 466 / 3e-148 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 444 / 6e-140 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT5G54650 346 / 2e-103 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT3G05470 344 / 9e-103 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 302 / 2e-88 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 294 / 7e-86 AFH3 formin 3 (.1.2) AT1G70140 262 / 3e-74 ATFH8 formin 8 (.1) AT3G07540 262 / 8e-74 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G59910 252 / 8e-70 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002149 [exp] 1405 / 0 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10019298 [exp] 450 / 2e-141 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 446 / 8e-140 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 439 / 1e-137 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10004505 [exp] 379 / 5e-116 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 362 / 3e-110 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 347 / 9e-105 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 345 / 6e-104 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011168 [exp] 328 / 2e-96 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G174700 [exp] 744 / 0 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 715 / 0 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G140200 [exp] 592 / 0 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 580 / 0 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G054900 [exp] 468 / 7e-149 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.013G017900 [exp] 374 / 3e-113 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 360 / 4e-108 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 347 / 3e-103 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 338 / 6e-100 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 316 / 1e-92 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10008739 pacid=23168999 polypeptide=Lus10008739 locus=Lus10008739.g ID=Lus10008739.BGIv1.0 annot-version=v1.0 ATGCCCATTCCTTCCTCCTTCCTCTTCTTCTTTCTAACACTACTGTTTCTCTTCCTCTGCCGTGGATCTTCCTTCCCAGTCCGCCGGATTCTCCACCAAC CCTTCTTCCCACTCGACTCTACTAACCCTCCTTCCCCTTCCCCTTCCTCTTTACCGCATTCTACTCCGGCAAAGCTTCCTTTCTCATCCACCACTCCAAC CGCCACCACTCAAAACTCCCCTTTCTTCCCAACTTACCCTTCCCCACCACCTCCGCCACCGTCTCCGGCCAACTTCGCCTCCTTCCCAGCCAACATCTCC TCCCTAATCCTCCCTCAATCCTCTTCCCCTAAGCCTTCCTCCTCCCACAAACTCCTCGCTCTCTCCCTCTCTTTCCTCCTCGCCGCCCTCATTGTCTCCT CCATCCTCATCTTTTACTTCTGCCGCCGCCGCCCTCCTCCCACCCCTAACTTCGATTCCAAAACCCACGTCGACCCTTCCGCTTCCTCCGACCATACCAC CAGCTCCCGTTTCTTCTCCAATGCCGATCGATCTCGCTCTTCCAACACCCATAAGTTCCCCCCTACCAACACTACTAACTCCTCCGAGTTCCTCTACCTC GGCACTCTCGTCAACTCCCACGGAATCGGCGCCAACGCAGCCGGTGGTCCTGTTTCTGACTCTTCTCCTGATGTCGTGGGAAAGATGGATTCCCCTGAGC TCCGTCCTCTTCCTCCGCTTCATCGCCAGAGTGGGGAAGTCATCAACGAAGAAGACGATGAAGAAGTGTTTTATTCTCCCAGAGGGTCATTGAACGGCGG CGGAGGAGGAGGCCGTGATAGCTCTGTTGGGGCGGGATCCGGATCCATGAGGATGTTTCGGACAATGGGTGCTCCGGATTTTGAAGGCGGAACCACTGAT TCAACTTCTTGCTCCTCCGATTCCTCATCTGGATCTTCCGCTCAGTCCCAATCGGTTAGTATTTCTCCTCTGGTGAGCTTGAGCTCGCGCCCCAAGTCCC CTGAATCTACCCACCCGCAGCTTGTTCATCCAGCTCCTCACCTCACCTCTGGTTGGCCGGCGTCGCCTTCCCTCTCTGCCGCTTCATCGCTCAGGATTTC TTTTAACTTGGAGCAAATCCATCGCCCTAACTCAAGGTCGTCTAGAGCTTCTTCTTCGGCGGCGTCTACCGGGAACATTGACTTGGATCGGAATGTGCTG CGGTCTCCGTCTCTGTCCCCTGCGAGGATTTTGAATCCGTTGAATCAGTCGAATCAAGGAAAGCTTTCGTCTTTAGCGTCGTCTGTTTCTAACTCGGATG CATCTTCTCCCAAGCTATGGAACGCTCTGAATCAAAACGTACGGTCGTTCTCAATGTCTTCCGCTTCTTCTTCTACTACCTCGCCGGACAGAGCATCAGA GGAGAAGTCTCAATCTGAACAATCTGATCAGTCTCCTCCTAGGATTTCGAATGATTTAGATCGGAATGGACAGTCTTCATTGCTGTCATCTGCTTGGACT TCGCCGGACCACAACAGCAGCATCAAGCTTCATCCGCTTCTGTCTCCTCAGACCACCATAGCTTCTTCATCGCCGGACAGAGGCTTTGGGGATGGATCAC CGGCTGTTCCATTGAATGTTTCTGGGCTGAACGTTAAGATGAGCAGTGTTCTAGGGCAGCCTATTTCAGATTCTCCTCCTCCTCCACCGCCTCCGCCTCC GCCTCCTGCATTGCCACCTCGGCCACTTTCTGTCCCGCCAAAGGATCTGGAGTCTTCTCCGGTGGCATCCACACCAATAGGTCAGTTAATTTCAACCCCG GCAGCGCCGCCGGTGCTTATACCGCCTTCCAGGCCGTTTGTGCTGCAAACGCCAACCAAAGTATCTACGATTCAATTGCCACCTAACGCTGAAGGGGAAG ACAGCTTCGAGGATACTCCGAGGCCAAAGCTGAAGGCTTTACATTGGGATAAAGTTCGAGCTAGCTCCGACCATGAAATGGTTTGGGATCAGATCAGATC CAGCTCGTTCAAACTGAATGAGGAAAAGATTGAAGAATTGTTTGTTATGAATGCTCCAAAGCCAAAGCCACTGCCTGGAGGAACTCCATCTCCAACCAAT CTGTTTGCTAACCAGGAAAATCGTGTTCTTGATCCCAAAAGAGCTCAGAACATTGCTATCTTGCTCAGGGCTTTGAATGTCACCATCGAGGAAGTATGTG AAGCACTCTTAGAAGGTAATACTGAGACTCTTGGAACTGAGCTTCTGGAGAGTTTGGTGAAGATGGCTCCGAGCAAAGAAGAGGAGCGTAAGCTGAAAGA GTACAAAGACGACACACCGGTGAAGCTTGGTCATGCTGAGAAGTTCCTCAAGGCAGTGTTAGATGTACCTTTCGCGTTTAAGCGGGTGGATGCAATGCTT TACATGGCTAATTTCGAGTCGGAGATTGAGTACCTCAGAAAGTCTTTTGAAACACTCGAGGCAGCCTGTGAAGAACTAAGAAACAGTAGGATGTTCTTGA AACTTTTAGAAGCTGTACTCAAGACGGGGAACCGCATGAATGTTGGGACCAACCGTGGCGACGCCCTTGCATTCAAGCTAGATACACTTCTGAAGCTAGT TGACGTGAAGGGTGCGGATGGAAAAACGACGCTGCTGCATTTTGTTGTGCAGGAGATCATAAGAACCGAAGGAGCTCGCCTCTCTGGTTCCAACCAAGCT TCAGACGCCACTGCTCAATGTGATGATGTCAAGTGCAGGAAGCTAGGGCTGGAAGTGGTCTCAGGGCTGAGTTCGGATCTTGGCAATGTGAAGAAAGCAG CTGCTATGGATTCTGATGTGCTTAGCAGTGAAGTCACCAAGCTTTCTATCGGTATCGAGAAGATAAGCGAGATCGTGAAGCTAAACGAGAGGATGGGGTT GAGTGGAAGTGGTCAGAAGTTTACAGAATCACTGAATAAGTTCTTGGAAATGTCGGAAGGAGAGATCATAAGGATTCAAGCGCAGGAAAGTGTTGCATTG TCCTTGGTGAAGGAAATAACAGAATACTTCCATGGGAACTCAGCAAAGGAAGAAGCTCACCCTTTCAGAATCTTCATGGTCGTCAGGGACTTCTTATCGG TTCTCGACAGGGTATGCAAAGAAGTTGGAATGATAAACGAGCGTACCATTGTTAGTTCGGCGTATAAATTCCCAGTACCGGTGAATCCAACGCTCCCTCA GGCATTCCCTGGACCTGATGCTAAGAAGCAGGACAGTTCGTCCGACGAAGAAACGGCATTGCCATAG
AA sequence Show only first row Show all	>Lus10008739 pacid=23168999 polypeptide=Lus10008739 locus=Lus10008739.g ID=Lus10008739.BGIv1.0 annot-version=v1.0 MPIPSSFLFFFLTLLFLFLCRGSSFPVRRILHQPFFPLDSTNPPSPSPSSLPHSTPAKLPFSSTTPTATTQNSPFFPTYPSPPPPPPSPANFASFPANIS SLILPQSSSPKPSSSHKLLALSLSFLLAALIVSSILIFYFCRRRPPPTPNFDSKTHVDPSASSDHTTSSRFFSNADRSRSSNTHKFPPTNTTNSSEFLYL GTLVNSHGIGANAAGGPVSDSSPDVVGKMDSPELRPLPPLHRQSGEVINEEDDEEVFYSPRGSLNGGGGGGRDSSVGAGSGSMRMFRTMGAPDFEGGTTD STSCSSDSSSGSSAQSQSVSISPLVSLSSRPKSPESTHPQLVHPAPHLTSGWPASPSLSAASSLRISFNLEQIHRPNSRSSRASSSAASTGNIDLDRNVL RSPSLSPARILNPLNQSNQGKLSSLASSVSNSDASSPKLWNALNQNVRSFSMSSASSSTTSPDRASEEKSQSEQSDQSPPRISNDLDRNGQSSLLSSAWT SPDHNSSIKLHPLLSPQTTIASSSPDRGFGDGSPAVPLNVSGLNVKMSSVLGQPISDSPPPPPPPPPPPALPPRPLSVPPKDLESSPVASTPIGQLISTP AAPPVLIPPSRPFVLQTPTKVSTIQLPPNAEGEDSFEDTPRPKLKALHWDKVRASSDHEMVWDQIRSSSFKLNEEKIEELFVMNAPKPKPLPGGTPSPTN LFANQENRVLDPKRAQNIAILLRALNVTIEEVCEALLEGNTETLGTELLESLVKMAPSKEEERKLKEYKDDTPVKLGHAEKFLKAVLDVPFAFKRVDAML YMANFESEIEYLRKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDALAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARLSGSNQA SDATAQCDDVKCRKLGLEVVSGLSSDLGNVKKAAAMDSDVLSSEVTKLSIGIEKISEIVKLNERMGLSGSGQKFTESLNKFLEMSEGEIIRIQAQESVAL SLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLSVLDRVCKEVGMINERTIVSSAYKFPVPVNPTLPQAFPGPDAKKQDSSSDEETALP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10008739 [exp]	0	1
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Lus10002149 [exp]	1.0	0.9471
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10001522 [exp]	1.4	0.9095
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10014475 [exp]	1.7	0.8830
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	4.5	0.8653
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	6.9	0.8239
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	8.1	0.8618
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	8.8	0.8541
					Lus10036558 [exp]	8.8	0.8047
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10014853 [exp]	8.9	0.8375
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	10.4	0.8352

Compare expression of checked genes

Lus10008739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.