Plant FIBer expression Database

Lus10008740 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48370 233 / 3e-76 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
AT2G30720 194 / 6e-61 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002148
[exp]
286 / 2e-96 AT5G48370 664 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G174800
[exp]
234 / 2e-76 AT5G48370 690 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
Potri.002G240100
[exp]
228 / 2e-74 AT5G48370 664 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
Potri.017G009800
[exp]
206 / 7e-65 AT2G30720 571 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10008740 pacid=23169031 polypeptide=Lus10008740 locus=Lus10008740.g ID=Lus10008740.BGIv1.0 annot-version=v1.0
ATGCACGGTCGAATCTTCGGAGGTTTCCTGATGCACAGGGCGTTCGAGTTGGCTTTCTCAACCTCCTATGCTTTCGCCGGCTCAGTCCCTTACTTTCTTG
AAGTTGATCACGTCGACTTCTTAAGACCTGTGGACGTGGGGGACTTCTTGCGGCTCAAGTCTTGCGTTCTGTACACCGAATTGGAGAACCCCGATGAGCC
TCTAATCAACGTTGAAGTTGTTGCTCATGTCACCAAGCCGGAACTAAGGTCCAGTGAGGTGACAAACACATTTTACTTCACCTTCACTATACGTCCAGAG
GCGAAAGCTACGAAAAATGGTAACACACTTCGGAATGTGGTTCCAACTACTGAGGAAGAAGCAAGGCTCATTCTGGAGCGGAAAGATGCAGAGGCCTTGA
ATTTAGTTAAGCTTGCTTGA
AA sequence
>Lus10008740 pacid=23169031 polypeptide=Lus10008740 locus=Lus10008740.g ID=Lus10008740.BGIv1.0 annot-version=v1.0
MHGRIFGGFLMHRAFELAFSTSYAFAGSVPYFLEVDHVDFLRPVDVGDFLRLKSCVLYTELENPDEPLINVEVVAHVTKPELRSSEVTNTFYFTFTIRPE
AKATKNGNTLRNVVPTTEEEARLILERKDAEALNLVKLA

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G48370 Thioesterase/thiol ester dehyd... Lus10008740
[exp]
0 1
AT2G18940 Tetratricopeptide repeat (TPR)... Lus10000035
[exp]
2.8 0.9083
AT5G48370 Thioesterase/thiol ester dehyd... Lus10008741
[exp]
3.5 0.8736
AT2G18940 Tetratricopeptide repeat (TPR)... Lus10000036
[exp]
6.2 0.8776
AT4G13150 unknown protein Lus10038173
[exp]
9.8 0.8218
AT1G10660 unknown protein Lus10029133
[exp]
12.0 0.8669
AT1G74640 alpha/beta-Hydrolases superfam... Lus10024219
[exp]
17.1 0.8763
AT3G10940 LSF2 LIKE SEX4 2, dual specificity ... Lus10029052
[exp]
18.7 0.8246
AT4G00370 PHT4;4, ANTR2 anion transporter 2, Major fac... Lus10014769
[exp]
19.0 0.8501
AT1G43850 SEU SEUSS transcriptional co-regul... Lus10029753
[exp]
22.4 0.7994
AT3G61220 SDR1 short-chain dehydrogenase/redu... Lus10014694
[exp]
28.1 0.8521

Lus10008740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.