Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48370 350 / 7e-119 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2) AT2G30720 279 / 3e-91 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002148 [exp] 503 / 1e-178 AT5G48370 664 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G240100 [exp] 388 / 6e-134 AT5G48370 664 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2) Potri.014G174800 [exp] 375 / 1e-128 AT5G48370 690 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1.2) Potri.017G009800 [exp] 300 / 4e-98 AT2G30720 571 / 0.0 Thioesterase/thiol ester dehydrase-isomerase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008741 pacid=23169010 polypeptide=Lus10008741 locus=Lus10008741.g ID=Lus10008741.BGIv1.0 annot-version=v1.0 ATGGCAAGATCACGCATCTACACCTTGTCGGTTTCCTGCTTTGCTCCAAGAACCTCAAAACCTTCTTCTTATTTCTTCTCCTTCAAATCTCCTCCAGACT TGATCGCTCCCTCATCTTTCCCTCCCGAAATGGACGTCAAAACGATCCCAGTGGTCTCCACATTCGCCAATCCTTTCGACACCTCCACCCCCCCCCCCTC CCACGGCGCCGCCGGCTTCGCTTCCGCCCGGAAGCCCATCGCTCTCTGGCCTGGAATGTACCATTCCCCTGTCACCAACGCTCTCTGGGAAGCTAGGTCT AAGATCTTCGACACCATGCTCGATCCCCCTAAAGACGCCCCGCCCCAGACAAAATTGCTCACCAAATCCCCTGACCAGAGCCGCACCAGCATTCTGTACA ACTTCTCCTCTGATTACATCCTCAGGGAGCAGTATCGCGATCCTTGGAATGAAGTCAGGATCGGGAAATTGCTCGAGGACCTTGATGCTTTGGCTGGCAC CATTTCCGTCAAGCACTGTGCTGATGAAGATTGCACAACAAGGCCGCTTCTACTAGTGACGGCTTCTGTTGATAGGATTGTTCTGAAGAAGCCAATCAGT GTAGATGTTGATCTCAAAATTGTTGGTTCTGCAATTTGGGTGGGCCGCTCCTCAATTGAGATTCAATTGGAAGTTATTCAACCTGCAAATGAGGACTCTG ATGTTGCAGACTCGGTAGCACTAACAGCCAACTTCATATTCGTGGCTCGTGACTCACAAACTGGGAAAGCTGCTCAAGTGAACCGACTGGTCCCAGAAAC CAACCAAGAGAAGCTGCTGTTCGAAGAAGCTGAAGCAAGGAGTAACTTGAGGAAGAGGAAAAGGGTGGTGGATGACGACAAAAAGGAAGTTGACGGGAGT GGCGGGGTGTTGGCGGGAGTGGCGGGGAAGCGAGTCGACTCAAGGCACTATTGGCTGAAGGAAGAGTCTTCTGTGACATGCCAGCTTTAG
AA sequence Show only first row Show all	>Lus10008741 pacid=23169010 polypeptide=Lus10008741 locus=Lus10008741.g ID=Lus10008741.BGIv1.0 annot-version=v1.0 MARSRIYTLSVSCFAPRTSKPSSYFFSFKSPPDLIAPSSFPPEMDVKTIPVVSTFANPFDTSTPPPSHGAAGFASARKPIALWPGMYHSPVTNALWEARS KIFDTMLDPPKDAPPQTKLLTKSPDQSRTSILYNFSSDYILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCADEDCTTRPLLLVTASVDRIVLKKPIS VDVDLKIVGSAIWVGRSSIEIQLEVIQPANEDSDVADSVALTANFIFVARDSQTGKAAQVNRLVPETNQEKLLFEEAEARSNLRKRKRVVDDDKKEVDGS GGVLAGVAGKRVDSRHYWLKEESSVTCQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008741 [exp]	0	1
AT5G59020			Protein of unknown function (D...		Lus10016455 [exp]	1.4	0.8790
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10011028 [exp]	3.2	0.8424
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008740 [exp]	3.5	0.8736
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	3.7	0.8784
AT1G61900			unknown protein		Lus10006773 [exp]	6.7	0.8439
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10040177 [exp]	8.0	0.8734
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015833 [exp]	9.9	0.8390
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	10.0	0.8625
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10014443 [exp]	12.0	0.8361
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	13.2	0.8559

Compare expression of checked genes

Lus10008741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.