Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43840 439 / 1e-151 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT1G05675 431 / 2e-148 UDP-Glycosyltransferase superfamily protein (.1) AT2G43820 424 / 7e-146 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT1G05680 420 / 3e-144 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT2G31790 390 / 1e-132 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 381 / 5e-129 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G24100 361 / 4e-121 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT4G15480 293 / 3e-94 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 291 / 2e-93 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 276 / 8e-88 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006353 [exp] 516 / 0 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014148 [exp] 516 / 0 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10024486 [exp] 503 / 1e-176 AT1G05680 389 / 4e-132 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10006352 [exp] 503 / 1e-176 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10017825 [exp] 483 / 1e-168 AT2G43840 392 / 2e-133 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006721 [exp] 471 / 2e-164 AT2G43820 392 / 9e-134 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 454 / 3e-157 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10020559 [exp] 454 / 3e-157 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 448 / 5e-155 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175000 [exp] 557 / 0 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.001G389200 [exp] 479 / 2e-167 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032300 [exp] 472 / 2e-164 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G140500 [exp] 472 / 2e-164 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G140300 [exp] 464 / 2e-161 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G117200 [exp] 461 / 4e-160 AT2G43840 461 / 1e-160 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032500 [exp] 451 / 2e-156 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 447 / 1e-154 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 447 / 1e-154 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.015G071900 [exp] 444 / 2e-153 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10008742 pacid=23169017 polypeptide=Lus10008742 locus=Lus10008742.g ID=Lus10008742.BGIv1.0 annot-version=v1.0 ATGGCGGCGAAGAAGCAACAACAGCCTCACTGCCTAGTGATACCATATCCAGCACAAGGCCACATCAACCCGATGCTCCAATTCTCAAAGCGCCTCCTCT CCAAATCCATCCGTATCACTCTCGTCAACACTCGTTTCATCTCCAAAACTATCTCCTCCACTTCCTCCACCTCCACGATCAACCTAGATACCATCTCCGA CGGCTACGACGACGGCGGTCATGCTGCCGCCGAAAGCACCCAGGCCTATTTGGAAAGTTTCCAGAAAGAAGGCTCAAAGACTCTATCCGAACTGATTCAA AAGCTGAGTAAAACCGAGTACCCTGCCCATTGCATTATCTACGACCCTTTCCTTCCGTGGTGTCTGGATGTAGCCAAGGAGCTTGGATTGTTTGCGGCGC CGTTTTTCACTCAGTCTTGTGCCGTCGACGCCATCTACTACCACGTCTATAAAGGCTCGCTTAAGCTTCCAGTTACTGATCAGCCGCAGAGTTTGATCAT CCCTGGTTTGCCGGCTCCTTTGGAAGCTGATGACATGCCTTCTTTCATCTCCGATTACGGCTCTTACCCCGCCGCCTTTGATATGATTATCTCCCAATTC TCCAACATTCATAAAGCTGACTGTATCCTCTGTAACACCGTCTACGATCTCGAGAACGAGACGGCGGATTGGCTATCGACGATCTGGCCACTGAGAACAG TGGGCCCCACAATTCCTTCGATGTACTTGGACAAGCAATTACAAGACGATAGAGATTACGGGTTCAGCATCTTCAAGCCGAATAACGAAGCCTGCATTAA TTGGCTGAACAACAACAAGCCGAAAGGCTCTGTAATTTATGTATCATTCGGCAGCCTGGCAAGCCTTGGAGCAGAGCAAATGGAGGAGATAGCGCACGGC TTGAAGAACAGCAACCACTACTTCTTATGGGTAGTAAGGGCGTCGGAAGTGGCCAAGCTACCTCCCAATTTCGCCGCCGACGTTGACATCGACGGGAAAG GGTTGATTGTGTCGTGGTGCCCGCAGCTGGAGGTGCTGGAACACGAGGCGGTGGGCTGCTTCGTGACCCACTGTGGATGGAATTCGACCCTTGAGGGGTT GAGCTTGGGAGTTCCCATGGTGGCGATGCCTCAGTGGACGGACCAGGCGACCAATGCAAAGTATATAGAGGACGTTTGGAAGATGGGAGTGAGGTGTCAG AAGAATGAAGAAGGGATTGTGAAGAGGGAAATGGTGGAGAAGTGTTTGAGGGGAGTTATGGAAGGGGAAGAAGGGAAAGAGATGAAGAGGAATGCGGACA AGTGGAGGAAGATGATGAAAGAAGCGGCGGGTGAAGGTGGGAGTTCTGATCGGAACATCTCTGATTTTGTGGATTCCTTGAGGAACCACAGGATCTAA
AA sequence Show only first row Show all	>Lus10008742 pacid=23169017 polypeptide=Lus10008742 locus=Lus10008742.g ID=Lus10008742.BGIv1.0 annot-version=v1.0 MAAKKQQQPHCLVIPYPAQGHINPMLQFSKRLLSKSIRITLVNTRFISKTISSTSSTSTINLDTISDGYDDGGHAAAESTQAYLESFQKEGSKTLSELIQ KLSKTEYPAHCIIYDPFLPWCLDVAKELGLFAAPFFTQSCAVDAIYYHVYKGSLKLPVTDQPQSLIIPGLPAPLEADDMPSFISDYGSYPAAFDMIISQF SNIHKADCILCNTVYDLENETADWLSTIWPLRTVGPTIPSMYLDKQLQDDRDYGFSIFKPNNEACINWLNNNKPKGSVIYVSFGSLASLGAEQMEEIAHG LKNSNHYFLWVVRASEVAKLPPNFAADVDIDGKGLIVSWCPQLEVLEHEAVGCFVTHCGWNSTLEGLSLGVPMVAMPQWTDQATNAKYIEDVWKMGVRCQ KNEEGIVKREMVEKCLRGVMEGEEGKEMKRNADKWRKMMKEAAGEGGSSDRNISDFVDSLRNHRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10008742 [exp]	0	1
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Lus10035670 [exp]	1.0	0.9883
AT1G78780			pathogenesis-related family pr...		Lus10029763 [exp]	4.0	0.9865
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019833 [exp]	5.7	0.9857
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10010391 [exp]	7.2	0.9755
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10003913 [exp]	8.4	0.9836
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10014105 [exp]	8.5	0.9762
AT2G18620			Terpenoid synthases superfamil...		Lus10009136 [exp]	8.8	0.9818
AT4G35180		LHT7	LYS/HIS transporter 7 (.1)		Lus10022642 [exp]	10.6	0.9806
					Lus10000527 [exp]	10.7	0.9781
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	12.0	0.9857

Compare expression of checked genes

Lus10008742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.