Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48385 584 / 0 FRIGIDA-like protein (.1) AT4G14900 192 / 2e-54 FRIGIDA-like protein (.1) AT3G22440 188 / 5e-53 FRIGIDA-like protein (.1) AT1G31814 140 / 5e-36 FRL2 FRIGIDA like 2 (.1) AT5G16320 133 / 2e-33 FRL1 FRIGIDA like 1 (.1) AT5G27230 96 / 1e-20 Frigida-like protein (.1) AT4G00650 73 / 5e-14 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1) AT5G27220 66 / 7e-11 Frigida-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002146 [exp] 1011 / 0 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10042965 [exp] 181 / 7e-50 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10032466 [exp] 181 / 7e-50 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10006113 [exp] 163 / 4e-44 AT3G22440 686 / 0.0 FRIGIDA-like protein (.1) Lus10010560 [exp] 163 / 1e-43 AT3G22440 714 / 0.0 FRIGIDA-like protein (.1) Lus10009979 [exp] 100 / 1e-21 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10043012 [exp] 99 / 1e-21 AT4G00650 176 / 5e-50 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10022433 [exp] 96 / 1e-20 AT4G00650 202 / 7e-60 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10038038 [exp] 95 / 4e-20 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G239900 [exp] 797 / 0 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.014G175200 [exp] 783 / 0 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.007G050800 [exp] 323 / 7e-104 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.008G153000 [exp] 181 / 3e-50 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 162 / 1e-43 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.018G078701 [exp] 137 / 2e-34 AT3G22440 189 / 4e-53 FRIGIDA-like protein (.1) Potri.005G044000 [exp] 130 / 1e-31 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G043900 [exp] 128 / 5e-31 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044100 [exp] 125 / 3e-30 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.015G110066 [exp] 61 / 1e-09 AT4G00650 140 / 5e-39 FLOWERING LOCUS A, FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10008744 pacid=23169030 polypeptide=Lus10008744 locus=Lus10008744.g ID=Lus10008744.BGIv1.0 annot-version=v1.0 ATGGAAGATAGTGAACCTGTAGGAACACTCATTGATTCTACTACCTCCAAGATACAGCAGCTTCAGAAAGCATTTGCTGAGCTCGAAAGCCACCGAGCTG TAACTCTCAACTTGAAGTGGAAAGAGCTTGAGGAACATTTTCATGGGCTTGAGAGATCCTTGAAGAGGCGGTTCCATGAACTGGAAGATCAAGAAAAGGA ATACGAAACTAAGACAAGGGAAGCCCAAGACATCCTGGAGAAGCGGCAAGCTGCTGTTAATGCTAAGGAACATGCTTCATTGGGGAAGCTCCAACAGAGA CGAGATGCTGCTGTGTTTGCTATTACTCATGCTTTAGAGAAGCACCAAAGTGTGTCTTCTTTGGATTCTTCTCTTCTTGCTACTGATAATCAATGTGATG AAGTCTCTCTCGAAGTCCAACCTTCTGACTCAATGCTTGCTGAAAGTAACTTGGGAGAAGTTATCAACCCTGGTGACGATGAAAATTGTGAGGCAGTGTC TTATCCAGAGCTAGTCAAACTATGTGAAGAAATGGATGCAGATGGGCTGCACAAGTTTATTTCTGACAACCGTAAGAACCTTGCCGTCCTGAAAGAGGAG ATTCCACTTGCTCTGAAAGCTGCACTTGACCCAGCTCAATTAGTTCTAAAGTCTCTGGAGAATTTCTACCCCTTAGAAGACCTTCCTGTGGATGGAAAGA AAGATGCAATCCTATTGGGTGTCCGCAGGACCTGTATCATGTTAATGGAATGCCTTAGCATCTTGCTTATGTATTCAGACCAAGTTTCTGTGTCCGAGGT AATTTCAGATGAGGTCAAAGACCGGGCAAAGGCTATTGCTGAGGGTTGGAACCCAAAGTTGGAAGCTCTGGACTTGGATGCAAGCAATGGGAACTCCTTG GAAGCACATGCATTTTTGCAACTTCTGGCCACCTTTGGCATTGCTTCTGATTTTGATGTCGAAGAGCTGTCTAGGCTGATCCCAATGGTCTCTCGTCGTC GACAAGCAGCTGAGCTCTGTCGGTTTCTTGGACTATCTGAGAAAATGCCAGGTGTAATTGAAGTTCTTGTGAACAGTGGAAGACAAATTGATGCAGTGAA CTTGGCATTTGCTTTTGAGTTAACAGACCAGTTCTCACCTGTACCCTTACTGAAGTCTTACTTGAAGGATGCAAAGAGATCTTCTCCACCAGCTAAGAAC AATGTGCAGAATGAGGTGAATGAGCGTGAGCTTGCTGCTCTCAAGGCCGTTATCAAGTGCATTGAAGAACATAAGATGGAGGAGCAGTATCGTGTGGAGC CACTCCAGAAACAACTCCTGCAGTTGGAGAAGGCCAAGGCAGAGAAGAAACGGGCAACTGAAGTAGCTAAGCCGCAATCAAAGAGGCCGCGTGCTAATGG CATCGGGTATGGGCCTCGTATGACCATAACTAACTCTGTTTCTCCTGATAAGACAGCCTTCTATCCAAGAGTTGCCGAGAGGTATCCACAATATGTTTAC GAGAGACCCTATGTGTACTCATCACCGACTGACAACCATGGCGCACCACAACTGATCCCTGCAGCAACTTACAACTTCGCCCCAAATCATGGCAACTATT TTGGAAACGGCTACCAGTACCCAACCCAGTATCTTCACTAA
AA sequence Show only first row Show all	>Lus10008744 pacid=23169030 polypeptide=Lus10008744 locus=Lus10008744.g ID=Lus10008744.BGIv1.0 annot-version=v1.0 MEDSEPVGTLIDSTTSKIQQLQKAFAELESHRAVTLNLKWKELEEHFHGLERSLKRRFHELEDQEKEYETKTREAQDILEKRQAAVNAKEHASLGKLQQR RDAAVFAITHALEKHQSVSSLDSSLLATDNQCDEVSLEVQPSDSMLAESNLGEVINPGDDENCEAVSYPELVKLCEEMDADGLHKFISDNRKNLAVLKEE IPLALKAALDPAQLVLKSLENFYPLEDLPVDGKKDAILLGVRRTCIMLMECLSILLMYSDQVSVSEVISDEVKDRAKAIAEGWNPKLEALDLDASNGNSL EAHAFLQLLATFGIASDFDVEELSRLIPMVSRRRQAAELCRFLGLSEKMPGVIEVLVNSGRQIDAVNLAFAFELTDQFSPVPLLKSYLKDAKRSSPPAKN NVQNEVNERELAALKAVIKCIEEHKMEEQYRVEPLQKQLLQLEKAKAEKKRATEVAKPQSKRPRANGIGYGPRMTITNSVSPDKTAFYPRVAERYPQYVY ERPYVYSSPTDNHGAPQLIPAATYNFAPNHGNYFGNGYQYPTQYLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	0	1
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10022254 [exp]	1.4	0.9096
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	4.0	0.8830
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	4.5	0.8643
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Lus10018144 [exp]	4.6	0.8589
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10006511 [exp]	4.6	0.8916
AT5G46070			Guanylate-binding family prote...		Lus10025456 [exp]	5.3	0.8959
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10038268 [exp]	6.5	0.8627
AT5G41580			RING/U-box superfamily protein...		Lus10024682 [exp]	6.9	0.8576
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10043390 [exp]	7.9	0.8371
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10023537 [exp]	8.1	0.8368

Compare expression of checked genes

Lus10008744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.