Plant FIBer expression Database

Lus10008745 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07525 179 / 2e-56 ATG10, ATATG10 autophagy 10, autophagocytosis-associated family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002145
[exp]
207 / 1e-67 AT3G07525 95 / 3e-24 autophagy 10, autophagocytosis-associated family protein (.1.2)
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0097 TypeIII_Chap PF03987 Autophagy_act_C Autophagocytosis associated protein, active-site domain
Representative CDS sequence
>Lus10008745 pacid=23169006 polypeptide=Lus10008745 locus=Lus10008745.g ID=Lus10008745.BGIv1.0 annot-version=v1.0
ATGGATGGAGCTTCCTGGGATGGAACATTGTCCCGTAGCGAGTTCGCAGCATCTGCTAGAGCTTTTGCTGAGAAATGGAAGCTGCTCAATAACCCTGATT
TCCCTCCCTGGGGATGGGTCAGCTCCCCCAAAGCGTCACTCTTTGCTTCTCCTCCCCATCAAGTTGATGAAGAAGGGTTCCTATCACTGGAGAATATATG
TGTCGCAAAGTCAACCGAGGTTGATGAAGTTGTTTCCTTAGCAGAAGCAGAGACGAGTTTACCTGAGGAAGAAGAATCAACCGACTCTGCAACCTTAGTT
GAAAGCAGTGATCTTGATAAGTTGCATCACTACTTTGATCTGCACATAATCTACAGTGCTTCATTCAGGGTTCCAGTGCTATACTTCCGTGCGTATTCCA
GTGATGGGGGGAACTTGGGTTTGAATGAGATTGAAAGAGCTCTTCCTGCCAACTCTGTCAAGTTCTTGATGGAATCAAAGTGGACTTTCATAACTCAGGA
GGAGCATCCGTACCTCAACAGACCCTGGTACAAGTTACATCCTTGTGCAAGCAGTGAGTGGATGAAGTTGCTATTCCAGGCTGACAAAAAAGGGGTGAAG
AAGCCAAGAGTGGAGCTGTATCTGCTATCATGGTTCTCTGTAGTTTCCCCAATGGTCGGCATTGCCATTCCCATTCACATGGTTAATAACGAATCACTCT
CACAACAGATTTAA
AA sequence
>Lus10008745 pacid=23169006 polypeptide=Lus10008745 locus=Lus10008745.g ID=Lus10008745.BGIv1.0 annot-version=v1.0
MDGASWDGTLSRSEFAASARAFAEKWKLLNNPDFPPWGWVSSPKASLFASPPHQVDEEGFLSLENICVAKSTEVDEVVSLAEAETSLPEEEESTDSATLV
ESSDLDKLHHYFDLHIIYSASFRVPVLYFRAYSSDGGNLGLNEIERALPANSVKFLMESKWTFITQEEHPYLNRPWYKLHPCASSEWMKLLFQADKKGVK
KPRVELYLLSWFSVVSPMVGIAIPIHMVNNESLSQQI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07525 ATG10, ATATG10 autophagy 10, autophagocytosis... Lus10008745
[exp]
0 1
AT3G11591 unknown protein Lus10016986
[exp]
5.7 0.7949
AT5G09225 unknown protein Lus10020870
[exp]
6.5 0.7785
Lus10042808
[exp]
7.7 0.7584
AT3G57360 unknown protein Lus10032322
[exp]
11.3 0.7094
AT2G25830 YebC-related (.1) Lus10038722
[exp]
14.1 0.7080
AT1G71390 AtRLP11 receptor like protein 11 (.1) Lus10016401
[exp]
20.0 0.7212
AT2G37195 unknown protein Lus10023187
[exp]
23.7 0.7477
AT5G55140 ribosomal protein L30 family p... Lus10031912
[exp]
26.1 0.7487
AT1G71430 unknown protein Lus10007091
[exp]
28.1 0.7350
AT1G67620 Lojap-related protein (.1) Lus10036979
[exp]
28.1 0.7311

Lus10008745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.