Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25470 355 / 4e-122 bacterial hemolysin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002144 [exp] 593 / 0 AT3G25470 368 / 3e-128 bacterial hemolysin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175500 [exp] 399 / 4e-139 AT3G25470 382 / 1e-133 bacterial hemolysin-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01728 [flax] [poplar] FtsJ FtsJ-like methyltransferase CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain
Representative CDS sequence Show only first row Show all	>Lus10008746 pacid=23169002 polypeptide=Lus10008746 locus=Lus10008746.g ID=Lus10008746.BGIv1.0 annot-version=v1.0 ATGAAATGCCCGGACCCGACCCGTCTGGGCGGATATGGTTGTTTATTTTACAAACCCGGCCTGACCCGGGCCCGTCTCTTGATCTGTTTGCTTCCAGACG TCGACGGGGTAGGTCGGCGAACATCAGAACAGCAACCCAGAAGGAAGTCGCAGTCAATCTTCTACTATCAGTACTACGAGGAACAACGCAAACAGAGCCC AATACAACTTATGGCAGCTCTTCAGTTTATGAAGCTTCCCCTAATCTCGCGTCTCTGTAATGGTTGTGCTCCGTCTTCAATAAGCTTGTTTCTTTCGCCC AAATCCTTCTTCCTTGTTAAATGGGAGATATCAGACCCACGATTTTGCTGTAGATGCTTTGCTTCAAAGCCAGAAAGGATTCAAATACCCAGAAAGAAAA AGAGGCTGGATGAAGTATGTGTTGATAGGTTCCAGCAGTACAGCAGAACGACGATACAATCTTGGATTATGCAAGGGAAAGTTTTTGTTAACGGCAAGAA AGTAAACAAAGCTGGCACTCCTGTTTCTGACAAAGCCGTTGTGGAAATCACTGCTGAAATCCCCAAATATGTATGTAGAGCTGGGTATAAATTGGAAGCA GCCATAGAACAACTAGGGGTTGATGTTACTGACAAAGTAGCTCTGGATTCTGGATTGTCCACCGGGGGTTTTACTGATTGCTTGCTTCAACATGGTGCAT CATTTGTCTATGGAGTTGACGTTGGTTACGGCCAGGTAGCAGACAAAATTAGGCGACATGAACGAGTTAGTGTGATAGAAAGAACAAACTTAAGATACCT GGCTGAGCTTCCCCAGAAAGTGGATATAGCAACTTTGGATCTTTCTTTCATCTCTATTCTCCTGGTTATGCCTGCTGTGGTTAGTCTCATGAAAGATGAG GCAAGTTTGGTGACCCTAGTCAAGCCTCAGTTCGAAGCTCATCGGTCACAGGTGGGAGGTGGTGGGATTGTGCGAGACCCCCAAGTCCACCAAGAGGTTC TTGAAAAGATTATAAATGGTGTGGAAAGGTTTGGCTTCCGGAAAAATGGATCGATTGAATCTCCATTAAAGGGAGCAGAGGGGAACACAGAATTTCTGGT CTACTTCATTAGGGAAAACAAAACAAGCGACTCAGCAAAGCAGACTGTGAACGAAATGCCGGCAGTTGCAGAACAAATCTCATAG
AA sequence Show only first row Show all	>Lus10008746 pacid=23169002 polypeptide=Lus10008746 locus=Lus10008746.g ID=Lus10008746.BGIv1.0 annot-version=v1.0 MKCPDPTRLGGYGCLFYKPGLTRARLLICLLPDVDGVGRRTSEQQPRRKSQSIFYYQYYEEQRKQSPIQLMAALQFMKLPLISRLCNGCAPSSISLFLSP KSFFLVKWEISDPRFCCRCFASKPERIQIPRKKKRLDEVCVDRFQQYSRTTIQSWIMQGKVFVNGKKVNKAGTPVSDKAVVEITAEIPKYVCRAGYKLEA AIEQLGVDVTDKVALDSGLSTGGFTDCLLQHGASFVYGVDVGYGQVADKIRRHERVSVIERTNLRYLAELPQKVDIATLDLSFISILLVMPAVVSLMKDE ASLVTLVKPQFEAHRSQVGGGGIVRDPQVHQEVLEKIINGVERFGFRKNGSIESPLKGAEGNTEFLVYFIRENKTSDSAKQTVNEMPAVAEQIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25470			bacterial hemolysin-related (....		Lus10008746 [exp]	0	1
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	1.7	0.9634
AT5G22340			unknown protein		Lus10043400 [exp]	2.6	0.9673
AT2G30695			unknown protein		Lus10004790 [exp]	2.8	0.9627
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10008075 [exp]	4.2	0.9577
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	5.8	0.9669
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	6.0	0.9351
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043143 [exp]	7.4	0.9529
AT2G26340			unknown protein		Lus10000477 [exp]	10.6	0.9589
AT4G02725			unknown protein		Lus10014675 [exp]	11.2	0.9593
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10025799 [exp]	11.2	0.9596

Compare expression of checked genes

Lus10008746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.