Plant FIBer expression Database

Lus10008747 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12830 327 / 9e-108 alpha/beta-Hydrolases superfamily protein (.1)
AT4G12800 268 / 2e-87 PSAL photosystem I subunit l (.1)
AT1G52510 74 / 2e-14 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002142
[exp]
466 / 5e-162 AT4G12830 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10002143
[exp]
341 / 1e-115 AT4G12800 300 / 4e-104 photosystem I subunit l (.1)
Lus10035875
[exp]
83 / 6e-17 AT1G52510 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10025787
[exp]
81 / 3e-16 AT1G52510 543 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G175700
[exp]
372 / 1e-125 AT4G12830 545 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Potri.014G175600
[exp]
284 / 2e-93 AT4G12800 300 / 3e-104 photosystem I subunit l (.1)
Potri.002G239700
[exp]
283 / 2e-93 AT4G12800 289 / 6e-100 photosystem I subunit l (.1)
Potri.001G201500
[exp]
75 / 2e-14 AT1G52510 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02605 PsaL Photosystem I reaction centre subunit XI
Representative CDS sequence
>Lus10008747 pacid=23169026 polypeptide=Lus10008747 locus=Lus10008747.g ID=Lus10008747.BGIv1.0 annot-version=v1.0
ATGGCAGCAGCTACTTCAGCATCTCCAATGGCTAGCCAACTCAAGAGCAGCTTCAGTACTTCATCCCTCAGGAGATTAGCTGTCCCCAAGGGCATCTCTG
GTTCTTCCTTGAGAGTTTTCTCCTCCAGGAGAACTGCTTCTTCCTTCACTGTCAATGCTATTCAGTCTGAGAAGCAAAACTACCAGGTGGTCCAGCCGAT
CAACGGCGACCCGTTCATCGGGAGCCTGGAAACACCGGTGACATCGAGCCCATTGATCGCATGGTACCTGTCGAACCTGCCAGCGTACAGGACAGCAGTA
AGCCCACTGCTGAGAGGAATAGAAGTGGGATTGGCCCATGGGTTCCTGCTGGTAGGCCCATTCGTTAAGGCGGGACCACTGAGGAACACAGAGTACGCAG
GGCAAGCAGGTTCATTGGCAGCGGCTGGACTGGTGGTCATCCTCAGCCTGACGTTGACCATGTACGGCATCGCATCCTTCGGGGAAGGAGAGCCGTCGAC
TGCTCCAGGATTAACGTTGACCGGACGGAAGAAGGTGCCTGACCAGCTTCAGACAGCTGACGGGTGGTCAAAGTTCACCGGAGGGTTCTTCTTCGGGGAG
ATTTCATGGGTGACCTGGGCTTATTTCCTTCTCTATGTCATCAACCTTCCTTACTACGTCAAACACAGCAAACCGTTTGGCGCCACCGCTTTCGCAACAT
CAAATCCCATGATGTCGTTCAACCTCCTCCTCTATTATCCTTGCGGCCGAGTTCCACGAGGAAATCTGCTAACTTCTCTTGTACAGCCAGCGGCAAAGAT
TAAGGATTACTATCTCATAGATGCAGAAGAGTCTGCTGGAGATGGCTTCTCCTTCAGTGGAGGAAAGTATTCCGGCGAGCCCAACCCATCTGATGAATGG
TTCAAACAAGGAAAAATGGTTAAAGCTCATCCTGTGTTTGGTACTAAGGAAAACGCCCAAGATCCTATTTTTGGACTAAAAATGGGTTCTGCTTCTCAAA
CATCCGATGACGTGTTCAGATGGTTCTGCGTGGAGAGTGGGAATGCTGATAATCCAACAGTTGTTCTGGTTCATGGTTTCCCTTTCTCAGGGTTTGAATT
TTCTGATAAGCCTCAACCAAAATATGGGTTTGACTACAGTTTGGATGAATACGAATCGTGTTTGGAGTCCTTGATTAATGAAATTGGACCAACTATTGCT
GTGAAATATGCAAGCAGTCACCAGGACAAGCTTAGCAGTTTGATACTTCTCAATCCTCCTCTAACAGCAGCACATATCAACCTTCCGTCAACCTTGTCTA
TCTTCAGCAACTTCTTGTTGGGTGAAATATTCTCACAGCATCCACTGAGGGCAAGTGACAAGGCATTGACAAGCAGTGGTCCTTACAAGATGAAAGAAGA
TGATGCTATGGTTTACAGAAGTCCATATCTCACATCTGGCTCTGCTCTTAATGCAATTAGTAGGGCAATGAAGAAAGACTTGAGGAGATATGTTGAAGAA
GCCAAGGCAATGCTATTAGATAACAACTGGGGGGTTCAGACGTGTGTTGGGGCCGGAGAGACCGGTGGTTGA
AA sequence
>Lus10008747 pacid=23169026 polypeptide=Lus10008747 locus=Lus10008747.g ID=Lus10008747.BGIv1.0 annot-version=v1.0
MAAATSASPMASQLKSSFSTSSLRRLAVPKGISGSSLRVFSSRRTASSFTVNAIQSEKQNYQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV
SPLLRGIEVGLAHGFLLVGPFVKAGPLRNTEYAGQAGSLAAAGLVVILSLTLTMYGIASFGEGEPSTAPGLTLTGRKKVPDQLQTADGWSKFTGGFFFGE
ISWVTWAYFLLYVINLPYYVKHSKPFGATAFATSNPMMSFNLLLYYPCGRVPRGNLLTSLVQPAAKIKDYYLIDAEESAGDGFSFSGGKYSGEPNPSDEW
FKQGKMVKAHPVFGTKENAQDPIFGLKMGSASQTSDDVFRWFCVESGNADNPTVVLVHGFPFSGFEFSDKPQPKYGFDYSLDEYESCLESLINEIGPTIA
VKYASSHQDKLSSLILLNPPLTAAHINLPSTLSIFSNFLLGEIFSQHPLRASDKALTSSGPYKMKEDDAMVYRSPYLTSGSALNAISRAMKKDLRRYVEE
AKAMLLDNNWGVQTCVGAGETGG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G12830 alpha/beta-Hydrolases superfam... Lus10008747
[exp]
0 1
AT3G48420 Haloacid dehalogenase-like hyd... Lus10013663
[exp]
1.0 0.9829
AT3G55800 SBPASE sedoheptulose-bisphosphatase (... Lus10028261
[exp]
2.0 0.9737
AT1G79040 PSBR photosystem II subunit R (.1) Lus10042461
[exp]
2.8 0.9699
AT2G46820 PSI-P, TMP14, P... THYLAKOID MEMBRANE PHOSPHOPROT... Lus10002673
[exp]
3.5 0.9724
AT3G55800 SBPASE sedoheptulose-bisphosphatase (... Lus10040228
[exp]
4.9 0.9653
AT5G02120 PDE335, OHP PIGMENT DEFECTIVE 335, one hel... Lus10023782
[exp]
5.0 0.9476
AT2G04700 ferredoxin thioredoxin reducta... Lus10039449
[exp]
5.5 0.9628
AT2G30570 PSBW photosystem II reaction center... Lus10024858
[exp]
5.5 0.9519
AT4G05180 PSII-Q, PSBQ, P... photosystem II subunit Q-2 (.1... Lus10007627
[exp]
6.5 0.9672
AT4G05180 PSII-Q, PSBQ, P... photosystem II subunit Q-2 (.1... Lus10018385
[exp]
6.7 0.9697

Lus10008747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.