Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12840 295 / 3e-99 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G18530 275 / 3e-91 Protein of unknown function (DUF707) (.1) AT1G11170 247 / 4e-81 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G61240 246 / 7e-80 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT3G26440 206 / 1e-64 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G13000 202 / 6e-63 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G08040 201 / 1e-62 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G27470 199 / 7e-62 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 197 / 3e-61 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G67850 197 / 1e-60 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002141 [exp] 385 / 1e-126 AT1G53140 1204 / 0.0 Dynamin related protein 5A (.1) Lus10000024 [exp] 264 / 2e-90 AT4G12840 211 / 2e-68 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006728 [exp] 248 / 1e-80 AT1G61240 533 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10018456 [exp] 245 / 4e-79 AT1G61240 504 / 1e-178 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10011228 [exp] 246 / 8e-78 AT1G61240 507 / 4e-177 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10038303 [exp] 241 / 2e-77 AT1G61240 507 / 2e-179 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10041107 [exp] 217 / 1e-68 AT4G12840 416 / 7e-145 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10036434 [exp] 210 / 1e-65 AT4G12840 402 / 9e-139 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006472 [exp] 209 / 1e-65 AT1G67850 598 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175800 [exp] 288 / 8e-97 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.004G227700 [exp] 270 / 2e-89 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.003G003100 [exp] 266 / 4e-88 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1) Potri.004G036800 [exp] 253 / 9e-83 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.011G045300 [exp] 251 / 6e-82 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.019G053000 [exp] 241 / 4e-78 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.017G065200 [exp] 205 / 4e-64 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.010G047200 [exp] 199 / 9e-62 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.008G185600 [exp] 198 / 2e-61 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.009G011000 [exp] 196 / 8e-61 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10008748 pacid=23168998 polypeptide=Lus10008748 locus=Lus10008748.g ID=Lus10008748.BGIv1.0 annot-version=v1.0 ATGCTTCTCTATCACCTCCGAGCCAGATCTGTTTTCTGTTTGATGCAGAAAACTTCTAATGTTGAATCACAGAAGCACAGATCATGCCTTGGCCGTGTTC TCTCTGCAGTGTTTCTGCTTACTGCTGCATTCTTCATTGGAAGGGGTTTTCTAAAGTCAAACACAGCAAAGAACTTACTGGCAATGGCAGTTGGAATAAA GCAGGTAAGGAGCGTCGATCAAATTGTTCAGAAGTTTCCTTCTGGTGACTTTGTGGTGATGCTTTTCCATTACGATGGAAATGTGGACGAATGGAAAGGC TTAGATTGGAGCAACCGTGCTATACATATCTCTGCTATCAATCAAACTAAGTGGTGGTTTGCAAAACGTTTCTTACATCCTGATATAATTTCTGAGTATG CTTATATCTTCTTGTGGGATGAAGACCTTGGAGTTGACAATTTTGATGCCCAAAGATATCTTTCAATTGTAAGAGCCGAAGGTCTCGAGATCTCACAGCC AGCTCTGGATCCTGACAAGTCAGACGTGCATCATCCTCTAACTCAGAGAAACAATGCAGTAAATGTGCACAGAAGGACATACCAAAAGATAGGAAGCAGA ACGTGCAACGACAACAGCACAGGTCCACCATGCACAGGGTTTGTAGAAATGATGGCTCCTGTTTTCTCAAAGGCATCGTGGCGCTGTGTATGGCATATCT TTCAGGTCTTATCGCCATCAACTTCCAGTCAAGCTTCTAGCAGATCAGCTGTAAGCTTTTTAGCTGTTCCTGACAATTGA
AA sequence Show only first row Show all	>Lus10008748 pacid=23168998 polypeptide=Lus10008748 locus=Lus10008748.g ID=Lus10008748.BGIv1.0 annot-version=v1.0 MLLYHLRARSVFCLMQKTSNVESQKHRSCLGRVLSAVFLLTAAFFIGRGFLKSNTAKNLLAMAVGIKQVRSVDQIVQKFPSGDFVVMLFHYDGNVDEWKG LDWSNRAIHISAINQTKWWFAKRFLHPDIISEYAYIFLWDEDLGVDNFDAQRYLSIVRAEGLEISQPALDPDKSDVHHPLTQRNNAVNVHRRTYQKIGSR TCNDNSTGPPCTGFVEMMAPVFSKASWRCVWHIFQVLSPSTSSQASSRSAVSFLAVPDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12840			Protein of unknown function (D...		Lus10008748 [exp]	0	1
AT5G14920			Gibberellin-regulated family p...		Lus10014519 [exp]	2.0	0.9034
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	2.2	0.9040
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10024770 [exp]	4.6	0.8817
AT5G20260			Exostosin family protein (.1)		Lus10005186 [exp]	7.7	0.8699
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	11.4	0.8598
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	14.5	0.8569
AT1G72490			unknown protein		Lus10008123 [exp]	28.0	0.7571
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10021227 [exp]	30.0	0.8567
AT3G14590		NTMCTYPE6.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10042475 [exp]	30.3	0.8464
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10003451 [exp]	30.4	0.8455

Compare expression of checked genes

Lus10008748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.