Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53140 536 / 0 DRP5A Dynamin related protein 5A (.1) AT3G19720 61 / 8e-10 DRP5B, ARC5 Dynamin related protein 5B, ACCUMULATION AND REPLICATION OF CHLOROPLAST 5, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002141 [exp] 717 / 0 AT1G53140 1204 / 0.0 Dynamin related protein 5A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G118500 [exp] 582 / 0 AT1G53140 1263 / 0.0 Dynamin related protein 5A (.1) Potri.006G254900 [exp] 56 / 3e-08 AT3G19720 1209 / 0.0 Dynamin related protein 5B, ACCUMULATION AND REPLICATION OF CHLOROPLAST 5, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008749 pacid=23169009 polypeptide=Lus10008749 locus=Lus10008749.g ID=Lus10008749.BGIv1.0 annot-version=v1.0 ATGATTCTAGGGTTGGAGACGATACCCGTATCTCCTCCTGAGTACCGACTTGGATTGGGCTTCGTCCAACTCTTTATGGGCCGAATAACCTGTAATACAT CTAGCAAACATAAAGCTTTGATTGACGGAGCGGCAGATCCTGCCCCCGAGCAGTGGGGCAAAACAATACAAGAAGAACAGTCGCAGAGTAGCCTTGGTGG TTGGCCTGGTATAGCAGTTAGTATAAGACCTCCCAATGCTTCTCTCAAGCTTTATGGAGGAGCAGCTAATGAAAGAGTAATGCATGAATTCAGGTGTGCA GCATATTCCATTGAGTGCCCTCCAGTCTCGAGAGAGAAGGCAGCTAACATATTATTAGCTCATGCTGGGCGCGGTAAGAACAAAGGGGTCATAGAAGCTT CAGCAGAAATTGCTCGTGCAGCTGCTCGCTCATGGCTTGCTCCATTACTTGACACAGCTTGCGATCGTTTGGCTTTTGTTATGAGGAATCTCTTTGATAT CGCCCTTGAGAGAAACCATTTTCGTGAACTAGAGTATGGAAAGAGAAACGGAAATATGGAAGGTTGTATTGGTTTTCATGCTGCTCTCAGGCGAGCTTAT AACCAATTCATAAAGGATATTACCCAGCAGAGCAAGCAACTGCTAAGGCATCACCTTGACTCGGTGACAAGTCCGTATTCTGATGTTTGTTATGAGAGTG ACTTTCATGGAGGCTATGGTTCAAGTGGCGGGGCCTCGTGCCATGATGAAATGATGAGTGATCAAGAGAACCTGCTACCAGAAAAGAATGGACAACAAAT CACCCCAGGAAAAGGTGCTGTTGAAACGAGAGAAGCTCTGGAAGAAAGCCACATGACTGTGCCTGAGACTCCATCTCCTGATCAGCCATGTGAAATTGTG TATGGTGCCATGAAGAAGGAACACGGAAATTACGTGGAACTTGGGGCAAAAAAGAGAGTTTCAAGAATGACGGGAAATATGAGAAACCATGAGCATCTGA AAACTCAAAATGGCGGATTTCTTGGATTGGGGAATGTGGATAGTGGGATCAGATCGGGTTCAGCGTATTCAGACATCTGCTCTTATGCTACGCAACATTT TGCACGAATACGTGAAGTTCTACTTGAGCTGAGCGTTACTTCAACTTTAAACTCTGGGTTTTTGACTCCCTGCCGCGACGATCTGGTAGTGACACTTGGA CTGGAGTTGTTTACGGTAACAGATGACAAGTTCAAGGAGATGTTTGCTGCACCAGGCGTTGTTGAAGTCCTGACTACAGAACGACAGTCACTACAGAAGC GGCAGAGGATACTCCAGTCTTGTTTGAATGAATTTAAAACAATATCTCAGACACTTTAA
AA sequence Show only first row Show all	>Lus10008749 pacid=23169009 polypeptide=Lus10008749 locus=Lus10008749.g ID=Lus10008749.BGIv1.0 annot-version=v1.0 MILGLETIPVSPPEYRLGLGFVQLFMGRITCNTSSKHKALIDGAADPAPEQWGKTIQEEQSQSSLGGWPGIAVSIRPPNASLKLYGGAANERVMHEFRCA AYSIECPPVSREKAANILLAHAGRGKNKGVIEASAEIARAAARSWLAPLLDTACDRLAFVMRNLFDIALERNHFRELEYGKRNGNMEGCIGFHAALRRAY NQFIKDITQQSKQLLRHHLDSVTSPYSDVCYESDFHGGYGSSGGASCHDEMMSDQENLLPEKNGQQITPGKGAVETREALEESHMTVPETPSPDQPCEIV YGAMKKEHGNYVELGAKKRVSRMTGNMRNHEHLKTQNGGFLGLGNVDSGIRSGSAYSDICSYATQHFARIREVLLELSVTSTLNSGFLTPCRDDLVVTLG LELFTVTDDKFKEMFAAPGVVEVLTTERQSLQKRQRILQSCLNEFKTISQTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Lus10008749 [exp]	0	1
AT1G69710			Regulator of chromosome conden...		Lus10037192 [exp]	6.1	0.8531
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	6.3	0.8495
					Lus10039807 [exp]	11.4	0.7974
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	12.7	0.8230
AT5G48830			unknown protein		Lus10025934 [exp]	14.0	0.8483
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10008619 [exp]	14.4	0.8068
AT5G36930			Disease resistance protein (TI...		Lus10018616 [exp]	15.2	0.8403
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	15.2	0.8193
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10028989 [exp]	15.7	0.8288
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	18.3	0.7979

Compare expression of checked genes

Lus10008749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.