Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53140 246 / 4e-77 DRP5A Dynamin related protein 5A (.1) AT3G61760 62 / 3e-11 ADL1B DYNAMIN-like 1B (.1) AT3G19720 60 / 1e-10 DRP5B, ARC5 Dynamin related protein 5B, ACCUMULATION AND REPLICATION OF CHLOROPLAST 5, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G60500 59 / 2e-10 DRP4C Dynamin related protein 4C (.1) AT3G60190 59 / 3e-10 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT1G14830 58 / 5e-10 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 57 / 1e-09 ADL1D DYNAMIN-like 1D (.1.2.3) AT1G60530 56 / 2e-09 DRP4A Dynamin related protein 4A (.1) AT5G42080 53 / 3e-08 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019170 [exp] 57 / 2e-09 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 57 / 2e-09 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10040117 [exp] 54 / 2e-08 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10001820 [exp] 53 / 3e-08 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10003873 [exp] 53 / 3e-08 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 52 / 7e-08 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10019506 [exp] 51 / 1e-07 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10024334 [exp] 48 / 2e-06 AT1G60500 771 / 0.0 Dynamin related protein 4C (.1) Lus10023073 [exp] 47 / 3e-06 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G118500 [exp] 251 / 4e-79 AT1G53140 1263 / 0.0 Dynamin related protein 5A (.1) Potri.006G254900 [exp] 66 / 2e-12 AT3G19720 1209 / 0.0 Dynamin related protein 5B, ACCUMULATION AND REPLICATION OF CHLOROPLAST 5, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.010G105900 [exp] 60 / 1e-10 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.003G141000 [exp] 59 / 2e-10 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.014G043600 [exp] 58 / 6e-10 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 57 / 2e-09 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G090600 [exp] 56 / 3e-09 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.001G147500 [exp] 54 / 1e-08 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G171200 [exp] 53 / 2e-08 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G095900 [exp] 52 / 5e-08 AT1G60500 798 / 0.0 Dynamin related protein 4C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family
Representative CDS sequence Show only first row Show all	>Lus10008750 pacid=23169008 polypeptide=Lus10008750 locus=Lus10008750.g ID=Lus10008750.BGIv1.0 annot-version=v1.0 ATGGTAGATGTTATAAAGTCTCAGACGGAGGCACTTTTGAAGAGGACTAACAGTGTGGTTTCTACCCAGCCACTTGTGATGAGGGCTGAATATGCACGTT GTCCCAATCTCACCATCATTGATACTCCTGGCTTTGTCCTTAAGGCAAAGAAGGGAGAACCAGAGAACATACCCGATGAAATTCTCTCCATGGTGAAGTC GCTCGCTAGTCCTCCTAATCAGATCCTCTTGTTCTGTCAACAAAGTGGCGTTGAGTGGTGTTTATCACTATGGTTGGATGAAATTCGGGAGATTGATCCC ACTTTCAGAAGAACCATAATTGTTGTTTCCAAATTCGACAATCGACTCAATGAATTTACTGACCGTTGGGAAGTCGACCGATACTTAAGCGCAAGTGGAT ACCTTGGATACAATTGTCACCCATACTATGTTGCCCCAAGGATAAACATGCGATCTCAAATGATGAATTTCGCAGGCAAATATCTCAGGTGGACTCTGAA TTCCTGCGCCATTTGCGTGATGGTATCAGTGGTGGGTTTGACGAAGAAAGGTTTGGGACGCATATTCGCTTCGATAGTCTAA
AA sequence Show only first row Show all	>Lus10008750 pacid=23169008 polypeptide=Lus10008750 locus=Lus10008750.g ID=Lus10008750.BGIv1.0 annot-version=v1.0 MVDVIKSQTEALLKRTNSVVSTQPLVMRAEYARCPNLTIIDTPGFVLKAKKGEPENIPDEILSMVKSLASPPNQILLFCQQSGVEWCLSLWLDEIREIDP TFRRTIIVVSKFDNRLNEFTDRWEVDRYLSASGYLGYNCHPYYVAPRINMRSQMMNFAGKYLRWTLNSCAICVMVSVVGLTKKGLGRIFASIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Lus10008750 [exp]	0	1

Compare expression of checked genes

Lus10008750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.