Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07620 540 / 0 Exostosin family protein (.1) AT5G03795 450 / 5e-154 Exostosin family protein (.1) AT5G25310 419 / 3e-142 Exostosin family protein (.1) AT5G11130 393 / 4e-132 Exostosin family protein (.1) AT5G20260 375 / 1e-125 Exostosin family protein (.1) AT3G42180 375 / 2e-125 Exostosin family protein (.1.3) AT5G33290 367 / 7e-122 XGD1 xylogalacturonan deficient 1 (.1) AT4G16745 327 / 1e-105 Exostosin family protein (.1.2) AT4G32790 313 / 1e-99 Exostosin family protein (.1) AT5G25820 314 / 2e-99 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025178 [exp] 484 / 1e-167 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10039142 [exp] 465 / 3e-159 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 463 / 4e-158 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 443 / 7e-154 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10001917 [exp] 444 / 2e-151 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10027707 [exp] 396 / 2e-133 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10005186 [exp] 393 / 3e-132 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10039980 [exp] 379 / 2e-125 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10001958 [exp] 348 / 6e-117 AT5G25310 372 / 1e-127 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G170900 [exp] 601 / 0 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.014G171100 [exp] 490 / 1e-169 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 468 / 7e-161 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 431 / 5e-147 AT5G25310 518 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 404 / 2e-136 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 403 / 2e-136 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 403 / 4e-136 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 402 / 6e-136 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.006G064600 [exp] 392 / 8e-132 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.018G125058 [exp] 387 / 2e-129 AT5G20260 526 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10008751 pacid=23169032 polypeptide=Lus10008751 locus=Lus10008751.g ID=Lus10008751.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCTGAAGATAGTAAACAACAACAGCAAGAAGCCAGACTGTACTACTCACCAACAACAACTCCCATTCTCTCTGCTTATTGTTATTCCCTGC TCATTTCCACTTTACTCATTGCTTCCCTTCTCCTCTTGCCCAATCTCCATGGCTCATCATCATCATCAAGCTCTTGGACATGGTGGACCTCCACCAATCC CCACCATCATGAGACGCCTCCTGCGGCGGATCCAGAGCTGGAGAAGATAGAAGCAACTCTGGCAATGGCTAGAGCTCTCATCAAGGAAGCTGCATCTTTG AATTGTGCATCCTCAGCTCCCCATCACGACTCTGATTATGTTCCGCATGGCATCGTTTACAGGAACCCTTGTGCATTTCACAGGAGCTACTTGTTGATGG AGAAGTTGTTCAAGATCTTCGTATACGAAGAAGGGGAGCCTCCATTGTTTCACGACGGCCCTTGCAAGAACATTTACTCCACGGAAGGACTCTTTTTGAA CTTCATAGAAACAGACCACACAAACTTCACTACCCCAAATCCTGAAGAAGCTCACGTCTATTTCCTTCCCTTCAGCGTCGTCCGGATCGTTCACTACCTC TTCCTTCCCGTCGTTAGGGACAAAGCTGTCCTCGAGCGTACCGTCCTCGACTATGTCCGCATCATTTCCCACAAGTATCCTTTCTGGAATCGTAGCCTCG GAGCTGACCATTTCATGCTCTCCTGCCACGACTGGGGTCCTAGGGCAACTTGGTACGAGAAAAAGCTGTACTACAACTCTATCAGGGTACTCTGCAACGC CAACACATCCGAGAATTTCAACCCGAAGAAGGACGTCTCATTTCCTGAAATCAACTTACCAACAGGGGAAATACCCTCTAAGAGCAATGATTCACCTCCT TCAGAATCCCATAATCGATCTGTCCTAGCCTTCTTTTCTGGGCGAATGCACGGAAAGATTAGGCCGGTGCTCTTCAGGTACTGGAAGGGTAAAGATGATG CTGACGTCAAGGTATACGAGACTCTTCCTGAAGGAGTTTCGTATCAGGAAATGATGAAGAAGAGCAAGTATTGTTTGTGTCCGAGCGGCCACGAAGTTGC TAGCCCTAGGATTCCTGAGGCGATCTACGCCGATTGTGTTCCTGTCCTGATTTCTCAGGATTACGTTCCACCTTTCAGCGACATCTTGAACTGGGAAACC TTCTCTGTTCAGGTTTCTGTGGAGGAGATTTACAACCTGAAGAGCATTTTGATGGCGATTCCAGAGAAAAGGTACTTGGAATTGGTAACTGGGGTGAGGC AAGTTAGGAGGCATTTTGAGGTGAATGATCCCCCGAGGAGATTCGATGTCTTTCATATGATCATTCATTCTGTTTGGCTTAGAAGGTTGAATTTCAGAAT AGACTCCATTGCAAGCAAATACACAGGAAAAATAAGAGAGAACTGGATTCCATCGCAGCTTAACCTCCTGCGATTGATCATTGTTTCTGAGCTGATCCGC AAACAGCTCTGGTTCATCCACCTCGATGTCCGGCGACATTGGTGTTTCAGGTGGAAGAAGGTTAACTCCGGCGTCGGTAGAATCTTTACTTATCCTGATG GCCATATTTGA
AA sequence Show only first row Show all	>Lus10008751 pacid=23169032 polypeptide=Lus10008751 locus=Lus10008751.g ID=Lus10008751.BGIv1.0 annot-version=v1.0 MEEAEDSKQQQQEARLYYSPTTTPILSAYCYSLLISTLLIASLLLLPNLHGSSSSSSSWTWWTSTNPHHHETPPAADPELEKIEATLAMARALIKEAASL NCASSAPHHDSDYVPHGIVYRNPCAFHRSYLLMEKLFKIFVYEEGEPPLFHDGPCKNIYSTEGLFLNFIETDHTNFTTPNPEEAHVYFLPFSVVRIVHYL FLPVVRDKAVLERTVLDYVRIISHKYPFWNRSLGADHFMLSCHDWGPRATWYEKKLYYNSIRVLCNANTSENFNPKKDVSFPEINLPTGEIPSKSNDSPP SESHNRSVLAFFSGRMHGKIRPVLFRYWKGKDDADVKVYETLPEGVSYQEMMKKSKYCLCPSGHEVASPRIPEAIYADCVPVLISQDYVPPFSDILNWET FSVQVSVEEIYNLKSILMAIPEKRYLELVTGVRQVRRHFEVNDPPRRFDVFHMIIHSVWLRRLNFRIDSIASKYTGKIRENWIPSQLNLLRLIIVSELIR KQLWFIHLDVRRHWCFRWKKVNSGVGRIFTYPDGHI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07620			Exostosin family protein (.1)		Lus10008751 [exp]	0	1
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10001816 [exp]	1.0	0.9459
AT3G20840	AP2_ERF	PLT1	PLETHORA 1, Integrase-type DNA...		Lus10031831 [exp]	3.5	0.9303
AT2G41810			Protein of unknown function, D...		Lus10031067 [exp]	5.0	0.9192
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10030478 [exp]	9.4	0.9111
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10031285 [exp]	9.5	0.9107
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	9.6	0.9210
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	10.7	0.9286
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10036922 [exp]	11.2	0.9010
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10008097 [exp]	15.5	0.9122
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10031260 [exp]	15.5	0.9103

Compare expression of checked genes

Lus10008751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.