Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59500 379 / 7e-134 Integral membrane HRF1 family protein (.1) AT1G30890 369 / 4e-130 Integral membrane HRF1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025577 [exp] 377 / 2e-133 AT1G30890 466 / 2e-168 Integral membrane HRF1 family protein (.1.2) Lus10027039 [exp] 377 / 5e-133 AT1G30890 469 / 2e-169 Integral membrane HRF1 family protein (.1.2) Lus10007418 [exp] 268 / 7e-91 AT1G30890 345 / 2e-121 Integral membrane HRF1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175900 [exp] 395 / 1e-140 AT3G59500 378 / 5e-134 Integral membrane HRF1 family protein (.1) Potri.007G129900 [exp] 374 / 7e-132 AT1G30890 380 / 2e-134 Integral membrane HRF1 family protein (.1.2) Potri.017G028425 [exp] 370 / 3e-130 AT1G30890 402 / 3e-143 Integral membrane HRF1 family protein (.1.2) Potri.017G028500 [exp] 370 / 3e-130 AT1G30890 402 / 3e-143 Integral membrane HRF1 family protein (.1.2) Potri.001G327700 [exp] 0 / 1 AT1G30890 53 / 2e-09 Integral membrane HRF1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [flax] [poplar] Yip1 PF03878 [flax] [poplar] YIF1 YIF1
Representative CDS sequence Show only first row Show all	>Lus10008752 pacid=23169016 polypeptide=Lus10008752 locus=Lus10008752.g ID=Lus10008752.BGIv1.0 annot-version=v1.0 ATGAAGCAAAGTGCAACATCAATACCAACCATCAATCCATTTGGGGATGCATTTTCTTCGGGTGGGATTGCAAAATCCGGACTCATTCGAGGTGACCTCG GATCTTATGGCGAGAAGATCCTCGGCTCCGGCTCCGACTATGTCCAAAGTAATATATGCAATTACTTGTCCGATCCTCAGTACTATTTCCAAGTGAATGA TCACTATGTCAGGAACAAATTGAAGATTCTCCTCCTTCCTTTTCTCCACAGGGGACATTGGACTCGGATAACAGAACCAGTTGGTGGGAGGCTGTCCTAT AAACCACCAGTGAATGACATCAATGCTCCAGACTTGTACATCCCGTGCATGGCTTTCGCAACCTACTTGGTCCTTGCTGGCATATCCTTGGGTCTCTCGG GCAAGTTTAGCCCAGAAGCATTGAACTGGCAGTTCGTGAAGGGAATGGTGGGGTGGGTGACGCAGGTGATGCTGCTCAAAGTGTCTCTGCTGTCACTTGG AGGAGGAGAAGCCCCAGTTCTGGACGTGGTTGCGTATGCAGGTTACACTTTCACTGGCATGTGCATTGCTCTAGTGGGAAGGATCATGCTCCACTACGCT TATTATCTCATCATCGTCTGGACTTGTCTTTGTATGGCGGTGTTTCTGGTGAAGACCATGAAGCGCACCTTGTTTGCTGAAGTCAGGTGCTTTGATGGCA GCAGCAAGCATCATTATCTCCTCCTTGGAGTTGCTCTCACTCAGTTCCCTTTGATCTTTTGGCTTAGCAACACTTCTGCCAATTGGGCTTGA
AA sequence Show only first row Show all	>Lus10008752 pacid=23169016 polypeptide=Lus10008752 locus=Lus10008752.g ID=Lus10008752.BGIv1.0 annot-version=v1.0 MKQSATSIPTINPFGDAFSSGGIAKSGLIRGDLGSYGEKILGSGSDYVQSNICNYLSDPQYYFQVNDHYVRNKLKILLLPFLHRGHWTRITEPVGGRLSY KPPVNDINAPDLYIPCMAFATYLVLAGISLGLSGKFSPEALNWQFVKGMVGWVTQVMLLKVSLLSLGGGEAPVLDVVAYAGYTFTGMCIALVGRIMLHYA YYLIIVWTCLCMAVFLVKTMKRTLFAEVRCFDGSSKHHYLLLGVALTQFPLIFWLSNTSANWA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59500			Integral membrane HRF1 family ...		Lus10008752 [exp]	0	1
AT2G03630			unknown protein		Lus10026665 [exp]	1.0	0.7810
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002611 [exp]	4.9	0.7157
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	9.3	0.7024
					Lus10031653 [exp]	9.5	0.6477
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10018917 [exp]	10.0	0.7004
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	11.0	0.6999
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	12.5	0.6994
					Lus10011218 [exp]	13.5	0.6937
AT3G47570			Leucine-rich repeat protein ki...		Lus10035429 [exp]	14.7	0.6644
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	15.0	0.6899

Compare expression of checked genes

Lus10008752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.