Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18270 826 / 0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) AT4G20930 74 / 7e-14 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 68 / 4e-12 6-phosphogluconate dehydrogenase family protein (.1) AT3G25530 67 / 9e-12 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT1G17650 66 / 4e-11 GR2, GLYR2 glyoxylate reductase 2 (.1) AT1G71180 63 / 2e-10 6-phosphogluconate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002140 [exp] 1098 / 0 AT1G18270 1147 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Lus10012301 [exp] 71 / 2e-13 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10023258 [exp] 71 / 5e-13 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10001349 [exp] 70 / 1e-12 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10015612 [exp] 61 / 2e-09 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10037629 [exp] 59 / 3e-09 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10012950 [exp] 49 / 5e-06 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10034974 [exp] 41 / 0.0008 AT4G29120 201 / 1e-64 6-phosphogluconate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G037000 [exp] 874 / 0 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Potri.014G197900 [exp] 73 / 6e-14 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.001G211500 [exp] 72 / 1e-13 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G465600 [exp] 67 / 7e-12 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.018G088000 [exp] 67 / 9e-12 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.003G040800 [exp] 57 / 1e-08 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07005 [flax] [poplar] SBD_N Sugar-binding N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10008753 pacid=23169024 polypeptide=Lus10008753 locus=Lus10008753.g ID=Lus10008753.BGIv1.0 annot-version=v1.0 ATGCAGTTGCCCTTGGTTCTTAGGCTGGGATCCATCCTTGGATTGTCTACGACATTATATCCCATCCTGCTGGTAACTCATGGATCAAAGAAACAAGACA TTCCTGGAGTGGCCAAGTCACTTACATTCCCTCTTCCACTTTTGGCTGTTGCTCATAGACAGCTTATTATTGCATCCTCACATTGTTCTGGCGTTGATGT AACTGTTCCTCTGATTGAGCGTATTGGTTTTATTGGCCTTGGAGCAATGGGTTTTGGGATGGCATCTCACCTGCTGAAGTTGGGTTTCTGTGTCCTTGGA TATGATGTATATAAGCCTACTCTAGCTAGATTTGTTGATGAAGGAGGTTTAATTGGTACATCTCCTGAAGATGTATCTGACGATGTTGATGTGCTAATAG TCATGGTTGCAAATGAAGCTCAAGCTGATAGTGTTCTGTATGGCGAGTTCGGTGCTGTTAAAGCACGTCCATCTGGAGCATCTGTCATCCTTTCATCTAC AGTATCTCCTGCTTTCGTGATCAATCTGGAGCAGCGTTTGATAAATGAAGGCAAAGATTTAAAGTTGGTCTATGCTCCAGTTTGTGGTGGTGTAAAGAGA GCAGCTGATGGAACACTTACGATAATGGCCTCGGGTACCAATGAAGCTCTTGAATGTGTTGGTTTTGTTCTCTCAGTTACCAGAATTGTGTACGAATTCC AGTGGCACGTTAATCAGTTGCTGGCTGGAGCTCATATAGCTTCAGCAGCTGAAGCAATGGCTTTTGGAGCTCGACTAGGCCTTCATACAAGGAAACTATT TCACTCCATTGCAGATAGTGAAGCAACATCTTGGTTGGTAGCCAGCACCCTGGATCCCTGGATGATTTTTGGAGTGATGCTTGAAAATCGGGTTCCACAC ATGTTGGACAATGATTATACCCCATATTCTGCACTAGACATCTATGTAAAGGATCTGGATGATGCTGGTGTAGTCAGAGTTTATGAAGTGCTCGCAGGAG TAAGAGTTGAAGGAAAGCTTCCAATTCTTAAGAAAGATGTTCTGCTGCAATCACTCCCACCTGAATGGCCCTTAGATCCTATTTATGATATACATAGACT CAATCAGATCAGTTCGAAAACATTGGTGGTACTAGACGATGATCCTGCTGGAACTCAAACTGTTCGTGATATTGAAGTATTAACAGAATGGAGCACTGAG GCACTTGTTGATCAATTTAGGAAAAGGCCATCCTGTTTTTTCATTTTGACTAACTCTAGATCTTTGAGTTCTGACAAGGCCAGCTCATTGATAAAGGCTA TATGTACCAACCTAGGTATCGCAGCTAGAACAGTTGAGAATGTTGACTATACAATAGTCCTGAGAGGTGATTCAACTTTACGTGGTCATTTTCCCGAGGA AGCCGATGCAGCTGTTTCAGTGATTGGTAAGGTTGATGCGTGGATCATCTGCCCATTTTTCCTTCAAGTTGGCAGCTATACAATAAATGATATACACTAT GTTGCAGATTCTGATTGGCTTGTTCCTGCTGGGGATACAGAGTTCTCTAAGGATGCTTCCTTTGGATATAAGTCTTCAAACCTTTGTGAGTGGGTTGAGG AAAAAACTATGGGGCGAATTTCAGCCAGTGATGTTACCTCTATTTCTATTCAACTACTGAGGAAAGGTGGGCCTGATGCTGTTTGTGAACTCCTCTGTGG GCTACCTAAGGTGGGGTCCATATGTATCGTTAATGCAGCAAGTGAAAGAGACGTGGCCGTATTTTCTTGTGCAATGATCCAGGCGGAGTTGAAGGGAAAG TCTTTCTTGTGCCGCACGGCTGCAAGTTTTGTGTCTTCTCGTGTTGGAATTATGCCAAAAGCTCCGATACTGCCAAAAGATGTTGGAATTGACAAACAGA GAGAGGGGGCACTGATAGTTATGGGGTCTTATGTACCAAAGACAACAAAACAGGTTGAACATTAA
AA sequence Show only first row Show all	>Lus10008753 pacid=23169024 polypeptide=Lus10008753 locus=Lus10008753.g ID=Lus10008753.BGIv1.0 annot-version=v1.0 MQLPLVLRLGSILGLSTTLYPILLVTHGSKKQDIPGVAKSLTFPLPLLAVAHRQLIIASSHCSGVDVTVPLIERIGFIGLGAMGFGMASHLLKLGFCVLG YDVYKPTLARFVDEGGLIGTSPEDVSDDVDVLIVMVANEAQADSVLYGEFGAVKARPSGASVILSSTVSPAFVINLEQRLINEGKDLKLVYAPVCGGVKR AADGTLTIMASGTNEALECVGFVLSVTRIVYEFQWHVNQLLAGAHIASAAEAMAFGARLGLHTRKLFHSIADSEATSWLVASTLDPWMIFGVMLENRVPH MLDNDYTPYSALDIYVKDLDDAGVVRVYEVLAGVRVEGKLPILKKDVLLQSLPPEWPLDPIYDIHRLNQISSKTLVVLDDDPAGTQTVRDIEVLTEWSTE ALVDQFRKRPSCFFILTNSRSLSSDKASSLIKAICTNLGIAARTVENVDYTIVLRGDSTLRGHFPEEADAAVSVIGKVDAWIICPFFLQVGSYTINDIHY VADSDWLVPAGDTEFSKDASFGYKSSNLCEWVEEKTMGRISASDVTSISIQLLRKGGPDAVCELLCGLPKVGSICIVNAASERDVAVFSCAMIQAELKGK SFLCRTAASFVSSRVGIMPKAPILPKDVGIDKQREGALIVMGSYVPKTTKQVEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008753 [exp]	0	1
AT1G18270			ketose-bisphosphate aldolase c...		Lus10002140 [exp]	2.4	0.9627
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	2.8	0.9654
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10025750 [exp]	4.0	0.9644
AT5G57655			xylose isomerase family protei...		Lus10001321 [exp]	7.7	0.9625
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029175 [exp]	8.4	0.9469
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	8.7	0.9606
AT3G53630			unknown protein		Lus10025312 [exp]	10.1	0.9348
AT1G19530			unknown protein		Lus10002540 [exp]	11.7	0.9596
AT1G29640			Protein of unknown function, D...		Lus10002781 [exp]	12.0	0.9383
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	12.0	0.9536

Compare expression of checked genes

Lus10008753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.