Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18270 465 / 5e-152 ketose-bisphosphate aldolase class-II family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G037000 [exp] 538 / 8e-180 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07005 [flax] [poplar] SBD_N Sugar-binding N-terminal domain CL0036 [flax] [poplar] TIM_barrel PF01116 [flax] [poplar] F_bP_aldolase Fructose-bisphosphate aldolase class-II
Representative CDS sequence Show only first row Show all	>Lus10008754 pacid=23169020 polypeptide=Lus10008754 locus=Lus10008754.g ID=Lus10008754.BGIv1.0 annot-version=v1.0 ATGGTTCATATTGTCCTTGCAATCAACAGGTTGAAGAACTTAAATTACGATGTATCTGTTGATAAAGTAGCTCTCAAGTCTTCAGACGAGAGAGAGGAGG AAATCAATAGAGCAGCTGAGATGGCGAACCATTTCATTGTAGCATTGAATGACACTTTAATAATGACCAGTCGGGAACTCATCACTGGAAAAACACCTTC CGAGAGTTTGGAAATCAATTTCAGAGTCAGTTCTGCACTTGTGGAAACAGTGAAGCGTATATCTGTGAGACCTCGATCCATTCTTGCAAAGGGTGGAATC ACTTCATCAGATCTTGCCACAAAGGCTCTGAAAGCTAGACGTGCCAAAGTAGTTGGAAAATCCTTGGCTGGTGTTCCCTTGTGGCAGATAGGTCCAGAAA GTAGACATCCTGGAGTTCCATACATTGTTTTCCCCGGAAATGTTGGTGATAGTAAAGCAGTCGCAGATCTAGTGAAATCGGTTATGATGTTGACAGTTCG TTTAATGGATGAAGAATGCAGAGAAAGGTGGATATGCTGTCGGAGCATTCAATGTGTACAATATGGAAGGAGCTGCGGCTGTGTTGCTGCAGCAGAGGAG GAAAATAGTCCTGCCATCCTACAGATTCATCCTAGCGCATTGAAACACGGAGGGAAAATGTTGGTGGCTAGTTGCGTTGCTGCTGCTGAAAAGGCCAAGG TTCCCGTCACTGTTCACTTTGATCACGGGACTTCAAAGCACGAGCTGGTGGAAGCTTTGGACTTGGGATTTGACTCACTGATGGTAGATGGTTCACACCT CTCATTCAAACAGAACATTTCGTATACCAAGTATATATCGACAGTGGCTCATTCCAAGAACCGGGACGTGCTGGTGGAGGCTGAACTCGGGAGGTTGTCT GGTACAGAAGATGACTTGACTGTTAAAGATTATGAAGCAAGGTTCACCGATGGGAATGAGGCAGAAGAGTTCATGGAGGAGACAGGAATAGATACACTTG CTGTCTGCATTGGGAATGTACATGGGAAGTACCCTCCAAGTGGCCCAAATCTCAGGCTCGACATGCTGAGGGATCTGCATGAGTTGAGCTCTAAGAGAAG CGTCTTTCTTGTGCTGCATGGAGCTTCGGGGTTGTCACCCCAGCTGATCCAGGCTTGTATAGAGCGTGGGGTCAGGAAATTTAACGTGAATACAGAGGTG CGCAAGGCATATGCGGGACACGCTGAGCAGCCCAAGCAGGAAGAAGGACCTGCTTGA
AA sequence Show only first row Show all	>Lus10008754 pacid=23169020 polypeptide=Lus10008754 locus=Lus10008754.g ID=Lus10008754.BGIv1.0 annot-version=v1.0 MVHIVLAINRLKNLNYDVSVDKVALKSSDEREEEINRAAEMANHFIVALNDTLIMTSRELITGKTPSESLEINFRVSSALVETVKRISVRPRSILAKGGI TSSDLATKALKARRAKVVGKSLAGVPLWQIGPESRHPGVPYIVFPGNVGDSKAVADLVKSVMMLTVRLMDEECRERWICCRSIQCVQYGRSCGCVAAAEE ENSPAILQIHPSALKHGGKMLVASCVAAAEKAKVPVTVHFDHGTSKHELVEALDLGFDSLMVDGSHLSFKQNISYTKYISTVAHSKNRDVLVEAELGRLS GTEDDLTVKDYEARFTDGNEAEEFMEETGIDTLAVCIGNVHGKYPPSGPNLRLDMLRDLHELSSKRSVFLVLHGASGLSPQLIQACIERGVRKFNVNTEV RKAYAGHAEQPKQEEGPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	0	1
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	1.0	0.9798
AT5G24890			unknown protein		Lus10009793 [exp]	1.7	0.9750
AT1G19530			unknown protein		Lus10002540 [exp]	2.0	0.9794
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10025286 [exp]	4.0	0.9672
AT4G27290			S-locus lectin protein kinase ...		Lus10016859 [exp]	5.6	0.9423
AT1G57610			Protein of unknown function (D...		Lus10034435 [exp]	6.0	0.9590
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006502 [exp]	6.3	0.9597
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10002134 [exp]	6.5	0.9487
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	8.8	0.9572
AT2G05910			Protein of unknown function (D...		Lus10033432 [exp]	10.0	0.9628

Compare expression of checked genes

Lus10008754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.