Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14050 72 / 1e-13 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT1G54130 71 / 3e-13 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT4G02260 59 / 2e-09 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002139 [exp] 437 / 3e-147 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1) Lus10003599 [exp] 72 / 9e-14 AT4G02260 643 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10022102 [exp] 71 / 5e-13 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1) Lus10001862 [exp] 70 / 7e-13 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1) Lus10015656 [exp] 59 / 2e-09 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1) Lus10037672 [exp] 58 / 5e-09 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089000 [exp] 341 / 3e-110 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1) Potri.003G066000 [exp] 71 / 2e-13 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.001G168200 [exp] 68 / 4e-12 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1) Potri.014G126700 [exp] 61 / 5e-10 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.010G002400 [exp] 44 / 0.0002 AT3G17470 688 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF04607 [flax] [poplar] RelA_SpoT Region found in RelA / SpoT proteins
Representative CDS sequence Show only first row Show all	>Lus10008755 pacid=23169000 polypeptide=Lus10008755 locus=Lus10008755.g ID=Lus10008755.BGIv1.0 annot-version=v1.0 ATGTTATTTATTTCCCTATTTGGACCAGATACTACAGCTACATGCCAGCACTGGGCAAACTGGTTGTTCCAGGGTATGTACTACACTTTTTTTAACCTCT TTATTGATCCCTTCTCATGCAGTTATGCCCTCCCATCATCAAAAGCTCATGCTGTGGCACAAGAGACATTACTTGTTTGGTGCTCGCTCGCTTCTAGGTT GGGTTTATGGGCATTGCAAGCAGAACTGGAAGATCTATGCTTTGCAGTTCTTCAGCCACAATTGTTCCGCAAGATGCGGGGTGATTTGGGTTCTATGTGG ACTTCTAATGGAAGAGACCTGTTTACAAGCAGAGCTACAGAAGGTGGTGTGCTGATTTCTGGTGAGGAAAACTCATCTTTGGATCTTTTAGAAGCTGTGG TGCCCTTTGATATCTTGTCAGATCGAAGAAAACGGACCATGTTTATTGAAAGCTTGAAGATCACAAATGAAGTTATTAAAAGACCAAAAGTTGTGCTGGA TGCTGGAATTGCCTTAGCATCTCTTGTCACTTGTGAGGAAGTACTTGAAAGGGAGCTATTCATCTCAACCTCTTTTCTTATGCTTGCAGTTATGTTCCGG GCATGGAAGTTTCCTTATCTTAGCCGGTTGAAGAGTTTGTATAGCATTTATAGCAAGATGAAAAGAAAGGAGGTGAGCATTAACAAAATATATGACTCCC GTGCATTAAGGGTTGTAGTTGGAGACAAAAAGGGAACTTTGAAGGGACCTGCGATTCATTGTTGCTACAGTCTGCTCAACACAGTCCATAGGCTCTGGAC TCCAGTTGATGGTGAATTTGATGATTACATTGTTAACCCAAAGCCTAGCGGCTATCAGGTTAGAGAACCCTCACGTGCTGAATTGAATGCTCTTAGAAGT TTCCTTCTATCTGCTAAGCGCTGTGGATACTTCCTTGCACCTTCATTCGAGCATGCTGAGCGCCTATTAATCCTCTTAGATACCCAGAGTTCAGAACTTT TGGTTATAATTTGCAGTCCCTGCATACCGCAGTGCAAGGCCCTGATGGTGCACCGTTGGAGGTTCAAATAA
AA sequence Show only first row Show all	>Lus10008755 pacid=23169000 polypeptide=Lus10008755 locus=Lus10008755.g ID=Lus10008755.BGIv1.0 annot-version=v1.0 MLFISLFGPDTTATCQHWANWLFQGMYYTFFNLFIDPFSCSYALPSSKAHAVAQETLLVWCSLASRLGLWALQAELEDLCFAVLQPQLFRKMRGDLGSMW TSNGRDLFTSRATEGGVLISGEENSSLDLLEAVVPFDILSDRRKRTMFIESLKITNEVIKRPKVVLDAGIALASLVTCEEVLERELFISTSFLMLAVMFR AWKFPYLSRLKSLYSIYSKMKRKEVSINKIYDSRALRVVVGDKKGTLKGPAIHCCYSLLNTVHRLWTPVDGEFDDYIVNPKPSGYQVREPSRAELNALRS FLLSAKRCGYFLAPSFEHAERLLILLDTQSSELLVIICSPCIPQCKALMVHRWRFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10008755 [exp]	0	1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	2.8	0.8220
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	3.0	0.8319
AT3G10530			Transducin/WD40 repeat-like su...		Lus10024656 [exp]	4.9	0.8159
AT2G34400			Pentatricopeptide repeat (PPR-...		Lus10010320 [exp]	4.9	0.7938
AT3G22530			unknown protein		Lus10000009 [exp]	5.3	0.7876
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	8.5	0.8127
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	9.5	0.7964
AT5G66050			Wound-responsive family protei...		Lus10041852 [exp]	10.0	0.7720
AT2G47830			Cation efflux family protein (...		Lus10000033 [exp]	12.8	0.7704
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10032979 [exp]	14.1	0.7150

Compare expression of checked genes

Lus10008755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.