Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002139 [exp] 447 / 5e-152 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089000 [exp] 316 / 2e-101 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02824 [flax] [poplar] TGS TGS domain
Representative CDS sequence Show only first row Show all	>Lus10008756 pacid=23169007 polypeptide=Lus10008756 locus=Lus10008756.g ID=Lus10008756.BGIv1.0 annot-version=v1.0 ATGCATGACTATGCTGAGCATGAGCTTGCTGCACACTGGCTATATAAAGAAGCCGAAAAAAAGTTGCCCTCTTTAAGCAACATGGATGAATCTGAAGTGG AAGCGAGTTACAACTTTTCCAAAGACACTGAAGACCACAACTCTATGAATGAGGATCAATGTCAAAAGTGCAGATTCCTTAGGGTGGGGCATCCAGTCCT TAGAGCAGAAGGGAGCCACCTGCTTGCTGCTGTTATAATTAGGATAGACGAGGGTGGGAAAGAACTGCTAGTTGCTGTGAGCTCTGGTATGGCTGCACCC GAGGGAGTAGCTGACAGAAAATCTTCGTGTCAAGTAAAGCGATGGGAAGCCTATGCAAGACTATACAAGAAGAGCTGGAGTTGTCCGGTTGGTGCGCAGC AAGATCAATTCGAGAGGATGCTGCCAATGTTCATCCAGGTGATTGAACTGACGGAGGAAGAGGAAAGTGAGTACTGGGAAGTGGTGGCAGCGGTGTTTGA AGGAAAGGCTGTCGATGACATCATGGCTGGGAAAGCGACTGAATCATCGTCATTGTCATCATCATCTACGCCAATGGAAGTGAGCATCAATAACAAGGTA TGCCTTCTGAGAGCGATGCTGGGGTGGGAGCAGCAGCTGCGCAGCGGCAGCAAGAGCTACAGAAGCAGCAGCGATAGTATGTCTTTGTCATCATCATCAA TGGCGCTGGGGGAAGTGGTCGTGATATGTTGGCCAAATGGGGATATAATGAGGTTAACCAACGGAAGTACTGCAGGAGATGCGGCTCAGAGAGTAGGACT GGAAGGGGAAGTGGTGGCAGTGAACGGTCATCTGGTCCTTCCAAGCACCCCCCTCAAAGACGGGGATGTAGTTGAGGTCCGGCATTGA
AA sequence Show only first row Show all	>Lus10008756 pacid=23169007 polypeptide=Lus10008756 locus=Lus10008756.g ID=Lus10008756.BGIv1.0 annot-version=v1.0 MHDYAEHELAAHWLYKEAEKKLPSLSNMDESEVEASYNFSKDTEDHNSMNEDQCQKCRFLRVGHPVLRAEGSHLLAAVIIRIDEGGKELLVAVSSGMAAP EGVADRKSSCQVKRWEAYARLYKKSWSCPVGAQQDQFERMLPMFIQVIELTEEEESEYWEVVAAVFEGKAVDDIMAGKATESSSLSSSSTPMEVSINNKV CLLRAMLGWEQQLRSGSKSYRSSSDSMSLSSSSMALGEVVVICWPNGDIMRLTNGSTAGDAAQRVGLEGEVVAVNGHLVLPSTPLKDGDVVEVRH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10008756 [exp]	0	1
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10010191 [exp]	6.9	0.7748
AT5G27530			Pectin lyase-like superfamily ...		Lus10036205 [exp]	7.8	0.8024
					Lus10020900 [exp]	11.6	0.7863
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	11.9	0.7992
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	12.5	0.7943
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10026838 [exp]	13.1	0.7809
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	18.5	0.7820
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023535 [exp]	20.9	0.7574
					Lus10033943 [exp]	21.2	0.7658
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	21.7	0.7903

Compare expression of checked genes

Lus10008756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.