Plant FIBer expression Database

Lus10008757 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17070 186 / 4e-58 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002137
[exp]
428 / 4e-154 AT5G17070 191 / 1e-60 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G052400
[exp]
181 / 2e-56 AT5G17070 212 / 1e-68 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09184 PPP4R2 PPP4R2
Representative CDS sequence
>Lus10008757 pacid=23168995 polypeptide=Lus10008757 locus=Lus10008757.g ID=Lus10008757.BGIv1.0 annot-version=v1.0
ATGGCTTCCACGGCCGAAACCACCTCCGACCTTGCAACCACTTCGACCGGTGAGAAAGTCTCCGAACACCTTCAGGACGGAGCTTCTGTAGCTAACGTCC
CTGTTCCAGAGGCATCCGACCATCGCGGGGATGAACCTGGGAGTGCTGATTCTGAAGACGAAGCTGGAGCCGTGCTGGAAATTATTGCATCCACTGGGAA
ATTCTGGCATAACTGGGATAACTTGAAGATTATTCTATCCTTTAAGCTGAAGCAGGTACGGGGAGGTATGCAAACTTATTTCCACCTAATCATTGCCAGG
GTTTTGTCTGAGTATCCTGAAGTAAAGATGACGAGTGAAGATCAGAAAGCTTCACTAGGAGAAACATACCCAGACTTGGTGAAAAGGCTGGATGATGCTC
TTCATAGCTTTGTTGATGGCCCTCCATTTACCCTGCAAAGGCTATGTGAGATCCTGCTGGCTGCAAGGAGCATCTATCTGAATCTCTCAAAGCTTGCTCT
AGCTCTAGAAAAGAATTTATTAGTCACCTCTACTTTGACTGCAAGCACGGACCCATGTCCACTAGTGAAGCCTAAGCAGGATGAACCTGACGATGCAAGT
CTAAAGCAACAGAAGGAGCAACCATCCAACTCGGAAGAAAATGCAGTCCAGCTGGCAGGGACGGATGAGGATGAAATAATGGCCGAGGTAGAGACTGATA
TTGGTGACGAGATGACAGTTGACATGGAAGCCTTTGAAGAGACGAAATAG
AA sequence
>Lus10008757 pacid=23168995 polypeptide=Lus10008757 locus=Lus10008757.g ID=Lus10008757.BGIv1.0 annot-version=v1.0
MASTAETTSDLATTSTGEKVSEHLQDGASVANVPVPEASDHRGDEPGSADSEDEAGAVLEIIASTGKFWHNWDNLKIILSFKLKQVRGGMQTYFHLIIAR
VLSEYPEVKMTSEDQKASLGETYPDLVKRLDDALHSFVDGPPFTLQRLCEILLAARSIYLNLSKLALALEKNLLVTSTLTASTDPCPLVKPKQDEPDDAS
LKQQKEQPSNSEENAVQLAGTDEDEIMAEVETDIGDEMTVDMEAFEETK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G17070 unknown protein Lus10008757
[exp]
0 1
Lus10043073
[exp]
1.7 0.8586
AT3G08720 ATPK2, ATPK19, ... ARABIDOPSIS THALIANA SERINE/TH... Lus10036653
[exp]
2.0 0.8605
AT2G17787 unknown protein Lus10017274
[exp]
6.5 0.8716
AT3G19630 Radical SAM superfamily protei... Lus10020989
[exp]
9.2 0.8185
AT4G14910 HISN5B, IGPD HISTIDINE BIOSYNTHESIS 5B (.1.... Lus10024033
[exp]
10.6 0.8053
AT4G19540 INDH, INDL IND1(iron-sulfur protein requi... Lus10024867
[exp]
19.0 0.7806
AT5G39360 EDL2 EID1-like 2 (.1) Lus10029662
[exp]
19.8 0.8311
AT5G58003 CPL4 C-terminal domain phosphatase-... Lus10036689
[exp]
20.6 0.8387
AT5G61400 Pentatricopeptide repeat (PPR)... Lus10015716
[exp]
22.4 0.7689
AT2G43190 ribonuclease P family protein ... Lus10026483
[exp]
24.3 0.8306

Lus10008757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.