Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002136 [exp] 632 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G082000 [exp] 474 / 2e-167 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008758 pacid=23168997 polypeptide=Lus10008758 locus=Lus10008758.g ID=Lus10008758.BGIv1.0 annot-version=v1.0 ATGGCTTCATCCTCGCCCTCTCACCCTCCTAAAATACTATTAGCTAAGCCTTCTGCAGTTATCAATTCCAGTCCCGTCCTGGGCAAATTTGGACGCCCCA CCCCTGCTGCTGATGACGAACCATTGCCGTTTCCTCGCACTCGTTTACCCGCACTCAATCTACTCTCTGATTCCTGGGATTTTCACTTCGACCGATTCCT CCCCTTCTTGACGGAAAACACCGATTTCACAGTGGTTGGAGTGATTGGGCCACCCGGTGTTGGAAAATCGACCATTATGAATGAGATTTATGGCTTTGAT GGAACTTCACCCGGAATGTTGCCACCGTTTAATGTACAATCAGAGGATAGCAGAGTAATGGTAAGGCATTGTACCGTGGGCATTGAACCAAGGATATCTG CCGAGCGGGTTATTCTTCTCGATACCCAGCCTGTTTTCAGTCCTTCTATTTTAACTGAGATGATGAAACCAGATGGTTCATCAATAATCCCAGTTTTAAA TGGTGAGAATCTCTCTGCCGAGTTGGCACAAGAACTTGCGTGCATCCAGATCGGGGTTCTGCTGGCATCAATTTGTCATATTGTGCTGGTGATATCAGAT GGCTCTCATGATGACCAGATGTGGCGTTTGATGTCAACGGTCGACCTGTTGAAACATAGGATACCTGATCCATCTTCAATCAGCTCTGTGAGTAGTGGCT GTGGAGCAGAGAGGGACAACAAAGATGAAGGCTTCGGGGAAGAGTACATAGCCACTCCTATCTTCGTGCATACAAATTTACAAGATGAAAATTGCACCCC ACATAATTACTTGCAACTGAGGAAGACATTATCACAATATTTCGGTTCCTCGTCATTCACGAGAGAGAGATATGGAAGCATGCCAAAAGTGCAGGCCCTG TATCCTGAGACTCTAGAGGCTGAGAGTGGCACGCTGCTGAAATTACATCTGATACCCTCTAAGACAAAAAATGAATCGCCAAGAGCTCAGAATGAAAGTC GACTTTCCCTACTTTGGAAACTGCGAGATGAGGTGTTATCGATGAACTGTCCTTCATTTGCTAGGGCAGTTTCGGAGCGTGACTGGTTAAAGAATTCTGC GAAGATATGGGAGATGGTGAAGAGTTCCGGTGTCATTGCGGAGTATGGTCGAATGCTGCAAAGTTCAGGGATGTTCAGAGGTAGATGA
AA sequence Show only first row Show all	>Lus10008758 pacid=23168997 polypeptide=Lus10008758 locus=Lus10008758.g ID=Lus10008758.BGIv1.0 annot-version=v1.0 MASSSPSHPPKILLAKPSAVINSSPVLGKFGRPTPAADDEPLPFPRTRLPALNLLSDSWDFHFDRFLPFLTENTDFTVVGVIGPPGVGKSTIMNEIYGFD GTSPGMLPPFNVQSEDSRVMVRHCTVGIEPRISAERVILLDTQPVFSPSILTEMMKPDGSSIIPVLNGENLSAELAQELACIQIGVLLASICHIVLVISD GSHDDQMWRLMSTVDLLKHRIPDPSSISSVSSGCGAERDNKDEGFGEEYIATPIFVHTNLQDENCTPHNYLQLRKTLSQYFGSSSFTRERYGSMPKVQAL YPETLEAESGTLLKLHLIPSKTKNESPRAQNESRLSLLWKLRDEVLSMNCPSFARAVSERDWLKNSAKIWEMVKSSGVIAEYGRMLQSSGMFRGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008758 [exp]	0	1
AT5G47330			alpha/beta-Hydrolases superfam...		Lus10004757 [exp]	2.8	0.7695
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	3.5	0.7882
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	8.1	0.7484
AT5G10870		ATCM2	chorismate mutase 2 (.1)		Lus10007444 [exp]	8.2	0.7313
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10037212 [exp]	11.6	0.7126
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	15.7	0.7229
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	16.4	0.7124
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	19.4	0.7277
AT3G11320			Nucleotide-sugar transporter f...		Lus10009878 [exp]	23.1	0.7287
AT2G37880			Protein of unknown function, D...		Lus10022595 [exp]	25.3	0.6906

Compare expression of checked genes

Lus10008758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.