Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) AT1G17930 78 / 2e-15 Aminotransferase-like, plant mobile domain family protein (.1) AT2G04865 66 / 2e-11 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 59 / 3e-09 hydrolases;protein serine/threonine phosphatases (.1) AT1G51538 51 / 1e-06 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50770 44 / 0.0002 Aminotransferase-like, plant mobile domain family protein (.1) AT5G18510 43 / 0.0005 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50820 42 / 0.0005 Aminotransferase-like, plant mobile domain family protein (.1) AT1G32120 42 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004818 [exp] 410 / 2e-142 AT1G17930 56 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10027047 [exp] 312 / 2e-101 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10012081 [exp] 270 / 3e-89 AT1G17930 53 / 8e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10020970 [exp] 244 / 3e-76 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10014633 [exp] 221 / 4e-71 AT2G04865 61 / 2e-11 Aminotransferase-like, plant mobile domain family protein (.1) Lus10006165 [exp] 192 / 1e-58 AT5G45260 66 / 5e-12 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) Lus10008733 [exp] 176 / 1e-53 ND / Lus10043226 [exp] 154 / 3e-45 ND / Lus10024786 [exp] 148 / 5e-43 ND 62 / 1e-11
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10008761 pacid=23169003 polypeptide=Lus10008761 locus=Lus10008761.g ID=Lus10008761.BGIv1.0 annot-version=v1.0 ATGGCAAAGACAAAAGGCGAAGGTAAGGAGCATAGCACTAACCATATCGAAGAAGAGACTGATGGAACTCAGAAAATGCGAGGGAAGGGCAAGTCAATGG ATACTATTAATCAACTTGCGGAGCGTGCAATTAGTTCTTGGAATAGAAGAGAAGCAGACAAGAAGAAGAAGAAAAAGATCTACGAAACCCCTGAGGCTTT TACCCCAATTAAAATTCCGGTATGGCAGTATAGACCTCCATCCCCCGCTAGGCCTGTTAGACCCCACCCCTTTCTAACTTCACGGCGGAGATTTATGCCA GATGACCGCGAGGAGGAGTTACTTGGTGGCTATGAGTCTGATACCTATCCACCTCCACCGTTTAGGGTTTCCACTGGTTCGTCTCATGCTTCAGCGAGCG TTGGTGTTGCAGCTGAGAGAGATGCTCGTTTTGCTTCTGCCACGAGTACACATGGTGGACTGATAGATGAGGAGGTCGAGACTACTAGAGTCGGGGGAAA CATTTCCCGCACTTGGCTGCTCAAGTCGAGGATAGAGGATGGTGGCCCGATTGCGACTAGTGTGATTCCCAGTTTCGGGGGTCACATTGCACATTATCTG TGGGAGGTTGGTGCTGACTACCGTAACATCCGCAATTTAAAGTTCTACATCCGTCCAGGTCATCTCAGGCATGTGATGAGATTTCAGCCTCAGACACCGA CACTTGAGATGATTATGTCTACCTCTGGACTTCTCCATTTGGGTCGTTTTGGGATGACCGATCAGTTGGATGAGGCACTGATCCACGCTTTTGTTGAGAG GTGGCAGCTAGATACTAACACGTTCCACATGCCCTTCGGAGAGATGACCATCACACTTCATGATGTATGTCATATTCTCCATATCCCTGTGCACGGACGT CCACTTCACGTTCCTCGATCCAGCGTTGACCTGCAGATCGATATAACTAGGGCTCTTTGTATCCATCCCGTGGATTTGAAGTTGCCAGTTGGAGGCGCTG CAGGTGGTGATGCACAATACCCTTCGTTGAAGGGTACTGCGATGTATGAGAAGTCGATGTTAGCCGTGGGGAGCGGTTTAGTGGATAAGGATGCATACAG GGTCTTCATGTTTTGTCTACTGGGTTCGACTCTGTTTACTGATAAGTCCGTCGATCGTACTCGTCTAGTGTTGTGGGAGTATTTTATGGGGGGCGTGTCC ACTATGTCACGATATGCTTGGGGTACTGGGGTTCTAGCATGGATGTGCCACTAG
AA sequence Show only first row Show all	>Lus10008761 pacid=23169003 polypeptide=Lus10008761 locus=Lus10008761.g ID=Lus10008761.BGIv1.0 annot-version=v1.0 MAKTKGEGKEHSTNHIEEETDGTQKMRGKGKSMDTINQLAERAISSWNRREADKKKKKKIYETPEAFTPIKIPVWQYRPPSPARPVRPHPFLTSRRRFMP DDREEELLGGYESDTYPPPPFRVSTGSSHASASVGVAAERDARFASATSTHGGLIDEEVETTRVGGNISRTWLLKSRIEDGGPIATSVIPSFGGHIAHYL WEVGADYRNIRNLKFYIRPGHLRHVMRFQPQTPTLEMIMSTSGLLHLGRFGMTDQLDEALIHAFVERWQLDTNTFHMPFGEMTITLHDVCHILHIPVHGR PLHVPRSSVDLQIDITRALCIHPVDLKLPVGGAAGGDAQYPSLKGTAMYEKSMLAVGSGLVDKDAYRVFMFCLLGSTLFTDKSVDRTRLVLWEYFMGGVS TMSRYAWGTGVLAWMCH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	0	1
					Lus10002152 [exp]	2.2	1.0000
					Lus10005187 [exp]	3.2	1.0000
AT4G33985			Protein of unknown function (D...		Lus10002400 [exp]	3.7	0.8324
					Lus10010117 [exp]	3.9	1.0000
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	4.5	1.0000
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	5.0	1.0000
					Lus10039750 [exp]	6.0	0.9995
					Lus10012774 [exp]	6.3	0.9642
AT1G13710		CYP78A5, KLUH	KLUH, "cytochrome P450, family...		Lus10015788 [exp]	6.7	0.9539
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	7.0	0.9671

Compare expression of checked genes

Lus10008761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.