Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14580 1188 / 0 polyribonucleotide nucleotidyltransferase, putative (.1) AT3G03710 417 / 3e-131 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT3G61620 69 / 1e-12 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT4G29060 55 / 2e-07 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2) AT5G30510 54 / 2e-07 ARRPS1, RPS1 ribosomal protein S1 (.1) AT4G27490 53 / 3e-07 3'-5'-exoribonuclease family protein (.1) AT2G47220 45 / 0.0002 ATDUF5 DOMAIN OF UNKNOWN FUNCTION 724 5 (.1) AT3G07750 42 / 0.0009 3'-5'-exoribonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022250 [exp] 1737 / 0 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10013636 [exp] 414 / 4e-129 AT3G03710 1148 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001332 [exp] 351 / 2e-108 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10043229 [exp] 56 / 1e-07 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10011108 [exp] 56 / 1e-07 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10037822 [exp] 55 / 2e-07 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10017100 [exp] 55 / 2e-07 AT5G30510 590 / 0.0 ribosomal protein S1 (.1) Lus10037395 [exp] 53 / 5e-07 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1) Lus10001331 [exp] 47 / 2e-05 AT3G03710 161 / 1e-45 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347900 [exp] 1342 / 0 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.019G040100 [exp] 419 / 1e-131 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.013G065700 [exp] 405 / 1e-126 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.014G094300 [exp] 67 / 6e-12 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.018G083900 [exp] 57 / 9e-08 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Potri.010G150300 [exp] 55 / 2e-07 AT5G30510 575 / 0.0 ribosomal protein S1 (.1) Potri.008G101100 [exp] 54 / 4e-07 AT5G30510 615 / 0.0 ribosomal protein S1 (.1) Potri.009G010600 [exp] 49 / 7e-06 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.014G148500 [exp] 49 / 8e-06 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1) Potri.004G212500 [exp] 49 / 1e-05 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03726 [flax] [poplar] PNPase Polyribonucleotide nucleotidyltransferase, RNA binding domain CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain CL0021 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Lus10008763 pacid=23177852 polypeptide=Lus10008763 locus=Lus10008763.g ID=Lus10008763.BGIv1.0 annot-version=v1.0 ATGTCCGCCTTAGCATCCAGGGCCAACCCTCTTCTCAACTCCATACCTTCCTTCCTAACATGGCGGACTTTAGGTTTCCGCACCATCTGCAGCGGCCGTC TTGGCTTCGCGCCGTCCGATTCCGAATCACCCGTCGCCGGAACCAAGGTCCTGGAGTCCTTCACTGAAGAATTCGAGATCGGCTCCAGCTTGATCACTCT CGAAACCGGAAAAATAGCAAGATTCGCTAACGGCGCTGTAGTTTTGGGCACCGGCCAGACCAAAGTGCTCTCCACCGTCGCCTCTTCTAAAGGCGACGCC CTCCGAGATTTCCTTCCTCTTACTGTTGATTATCAAGAGAAACAGTTTGCTCAAAGTGTAATTCCAACTACCTTCATGCGAAGGGAAGGTGCTCCCAGAG AACGCGAACTCTTATGTGGCCGTCTTATTGATCGGCCGATTCGTCCGCTCTTCCCTTCCGGATTTTATCACGAAGTTCAGGTAACGGCGAGTGTTCTCTC ATCCGATGGTAAACACGATCCGGATGTGATGGCAGCTAATGCAACATCTGCTGCACTTATGTTATCTGATATACCCTGGGCTGGCCCCATCGGAATGATA CGAATCGGGAGAATGGATGGGAAATTTGTTGTCAATCCCACCATGGATGAGCTCAACTTAAGTGATCTCAACTTAGTTTATGCATGCACAAAGGATAAAA CTTTAATGATAGATGTACAAGCTCGTGGGATCACAGAGAGAGATCTTGAAGCAGGGTTGAGACTGGCTCATCCAGAGGCAGTTAAGTACATCGAACCCCA GATCAGACTGGCTGCAAAAGCTGGAAAACAGAAAAAGGATTATACATTATCTATGTTATCAGACAAAACAATGGAAAAAGTTGGTACATTGGCAGAAGCG AATATTGAAGCTGTTTTTACTGATCCTTCTTACGGCAAGTTTGAGCGTGGAGAAGCCTTAGAGAAGATCATGCAAGATGTAAAAGAAAAACTCAAAGAAG AAGGTGACGAGGAGAGTTTAAAAGTTCTTCCAAAGGCAATAGATACAGTGAGGAAACAGGTAGTACGGAAGAGAATTCTTGCAGAGGGTTACAGACTTGA TGGAAGACATCTTGATGAAGTGAGGCCTATATATTGTGAAGCTGGAAATTTGCCCCTTTTACATGGATCTGCTCTTTTTAACCGTGGGGACACTCAGGTT CTTTGTACTGTAACACTAGGAGCACCCCAAGATGCTCAGCGCTTAGATGCTATTGTTGGACCCTCAACGAAGCGTTTCATGCTCCATTATAGTTTTCCAC CATTTTGCATTAACGAAGTTGGTAAACGGACAGGGCTTAACAGACGTGAGGTTGGGCATGGCACCCTTGCAGAAAAGGCTTTACTAGCGGTGTTACCTCC AGAAGATGAATTTATGTATACTGTTCGCATTAATTCTGAAGTCATGGCATCTGATGGGTCAACTTCAATGGCAACTGTTTGTGGAGGCAGTATGGCTTTG ATGGACGCTGGTATCCCTTTACGAGAGCATGTAGCTGGTGTTTCTGTGGGTCTTGTTAGTGAAGTTGACTCGACGGGGGAAATTAAAGACTACCGTATAT TGACCGATATTTTGGGCCTGGAAGATCATTTGGGGGATATGGACTTCAAAATTGCAGGAACACGGAGTGGTATCACTGCAATTCAGTTGGATATTAAACC AGCTGGAATTCCTTTGGACATAGTTTGTGAGAGTTTGGAGGCTGCACGTAAAGGTCGCATTCAGATCCTTGAGCACATGGAAAGAGAGATTAATACTCCA CGCTCTAAGGATGATAGGAATGCTCCTCGACTAGCTAGCCTGAAATATAGCAATGATGCTCTTCGTCGCTTGATTGGACCTCTCGGGGCTCTTAGGAAAA AGGTTGAAGAGGAAACAGGTGCACGTTTGTCTGTCGGTGATGGAACACTTACCATAGTAGCTAAGAATCAGACCGTGATGGAGAAAGTGCTAGAAAAGGT TGATTTCATTATTGGCCGGGAGATTGAAATTGGTGGAATTTACAAGGGCGTCGTAGCTTCAATAAAAGAATATGGTGCATTTGTAGAGTTCGGTGGTGGC CAGCAAGGTCTACTGCATGTTTCTGAATTATCACATGAGCCAGTGATACGAATATCGGATGTTTTATCGGTCGGCCAGCAGATTTCTCTGAAGTGCATAG GACAGGATGTACGTGGGAACATTAAGTTATCTCTTAAAGCAATGTCTCAACGCCCAAAATCAGCGGAGGACAATGACAGTTATGTTGCTGTTAGCAAAGA GATGGCTGATACTCAGTCTTCGACCACCGATTCGTCCACTCAGCTAGATCACAAGTCAGTTCTTGATTTGCTGCCGCAGGCTACAAGTATTGAAAATCCG ACTTCTTCACCAGATTTTCTGATTCGAAGTGCTGTAGAGTGTGACGTAGAGGGGAAAAAATCAGCTTTGCGATCTCAGGGATCTGAAAACACCCCAGGGC CATCTGGGGCCTGTTCGGATGTCAAGGAAGTGAAAGGCAAGGCTCGTACAAGCGCAAAAACACTGAAACTCGGAACAACAGTAACAGCAAAGGTGCATGA GATTCGTGCGCTTGGCTTGGTACTTGATCTGGGAGGTGGAGTTCGTGGAATGTATCGTTTCGAGGATCAAGGGAAGACAAAATTCGCAGTTGGTGATGAG TTGGTAGTAAGGTGCACAAGTTTTTCAAGCAAGGGGATTGCAGTCATGTCTCTAGTGTATGCATGA
AA sequence Show only first row Show all	>Lus10008763 pacid=23177852 polypeptide=Lus10008763 locus=Lus10008763.g ID=Lus10008763.BGIv1.0 annot-version=v1.0 MSALASRANPLLNSIPSFLTWRTLGFRTICSGRLGFAPSDSESPVAGTKVLESFTEEFEIGSSLITLETGKIARFANGAVVLGTGQTKVLSTVASSKGDA LRDFLPLTVDYQEKQFAQSVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPSGFYHEVQVTASVLSSDGKHDPDVMAANATSAALMLSDIPWAGPIGMI RIGRMDGKFVVNPTMDELNLSDLNLVYACTKDKTLMIDVQARGITERDLEAGLRLAHPEAVKYIEPQIRLAAKAGKQKKDYTLSMLSDKTMEKVGTLAEA NIEAVFTDPSYGKFERGEALEKIMQDVKEKLKEEGDEESLKVLPKAIDTVRKQVVRKRILAEGYRLDGRHLDEVRPIYCEAGNLPLLHGSALFNRGDTQV LCTVTLGAPQDAQRLDAIVGPSTKRFMLHYSFPPFCINEVGKRTGLNRREVGHGTLAEKALLAVLPPEDEFMYTVRINSEVMASDGSTSMATVCGGSMAL MDAGIPLREHVAGVSVGLVSEVDSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRSGITAIQLDIKPAGIPLDIVCESLEAARKGRIQILEHMEREINTP RSKDDRNAPRLASLKYSNDALRRLIGPLGALRKKVEEETGARLSVGDGTLTIVAKNQTVMEKVLEKVDFIIGREIEIGGIYKGVVASIKEYGAFVEFGGG QQGLLHVSELSHEPVIRISDVLSVGQQISLKCIGQDVRGNIKLSLKAMSQRPKSAEDNDSYVAVSKEMADTQSSTTDSSTQLDHKSVLDLLPQATSIENP TSSPDFLIRSAVECDVEGKKSALRSQGSENTPGPSGACSDVKEVKGKARTSAKTLKLGTTVTAKVHEIRALGLVLDLGGGVRGMYRFEDQGKTKFAVGDE LVVRCTSFSSKGIAVMSLVYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	0	1
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10010919 [exp]	1.0	0.9590
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019208 [exp]	1.4	0.9424
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Lus10028190 [exp]	4.7	0.9168
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10017896 [exp]	6.0	0.9232
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	6.5	0.9407
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10031994 [exp]	6.8	0.8792
AT2G45030			Translation elongation factor ...		Lus10039840 [exp]	6.8	0.9018
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10034789 [exp]	7.1	0.9001
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	7.5	0.9340
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	13.0	0.9219

Compare expression of checked genes

Lus10008763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.