Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40380 423 / 5e-144 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G70530 361 / 8e-120 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT1G19090 347 / 7e-115 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT1G70520 318 / 3e-103 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G16670 259 / 2e-83 Protein kinase superfamily protein (.1) AT3G09010 253 / 4e-81 Protein kinase superfamily protein (.1) AT4G11470 261 / 5e-81 CRK31 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) AT4G11530 259 / 2e-80 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23240 249 / 6e-80 CRK16 cysteine-rich RLK (RECEPTOR-like protein kinase) 16 (.1) AT4G11460 258 / 8e-80 CRK30 cysteine-rich RLK (RECEPTOR-like protein kinase) 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029122 [exp] 367 / 7e-122 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10013040 [exp] 363 / 1e-120 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10029123 [exp] 320 / 1e-103 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 315 / 2e-102 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 315 / 1e-101 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10009631 [exp] 278 / 2e-90 AT4G21390 343 / 2e-115 S-locus lectin protein kinase family protein (.1) Lus10038940 [exp] 276 / 4e-90 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026207 [exp] 265 / 3e-85 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042460 [exp] 263 / 8e-85 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348000 [exp] 458 / 2e-157 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.012G087000 [exp] 389 / 2e-130 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.010G043900 [exp] 380 / 3e-127 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.010G043700 [exp] 302 / 6e-97 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043800 [exp] 301 / 1e-96 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.012G055500 [exp] 274 / 6e-89 AT4G23180 364 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G063600 [exp] 272 / 3e-87 AT1G07650 479 / 4e-160 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G073316 [exp] 268 / 1e-86 AT1G07650 487 / 4e-164 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G073516 [exp] 270 / 5e-86 AT1G29730 644 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.007G056000 [exp] 273 / 7e-86 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10008764 pacid=23177867 polypeptide=Lus10008764 locus=Lus10008764.g ID=Lus10008764.BGIv1.0 annot-version=v1.0 ATGAGCTTCAAGTACGAAACCCTAGAGAAGGCGACGAATTACTTCAGCTTATCAAAGAAGTTAGGCCAAGGAGGAGCTGGAACTGTGTACATTGGAAACC TTCCAAATGGTCAAACAGTTGATGTGAAGAGACTGATATTCAACACAAGGCAGTGGGTCGACGAGTTCTTCAACGAGGTCAATTTGATCAGCGGAATCCA ACACAAGAACCTTGTCAAGCTATTGGGTTGCAGCATTGAAGGACCTGAGAGTCTGCTGGTGTATGAGTATGTTTGTAACAAGAGCCTTGACCAGTTCCTT TTTGGTAATGATCATCCCATCAAAGAGAATAAGAACAAGGCCACAATGACGTTGGATTGGAAGCAGAGGTTGAACATTATAGTCGGAACAGCAGAAGGAC TAACGTATCTTCACGGTGGCGATGGAGTTTCTCCAGTAAGGATAATCCACAGAGATATCAAAAGCAGCAATGTGCTTCTGGATGAAGACTTCAATGCGAA GATTGCGGATATCGGACTGGTTAGACATTTTGGTGCTGATAAGTCCCATCTGAGTACTGGAATAGCAGGAACAATAGGGTACATGGCTCCAGAGTATTTG GTTCGAGGACAACTCACTGAGAACGCAGATGTGTACAGTTTCGGAGTCCTGGTTCTGGAAATCGTGTGCGGTAAAAGGTGCAATGCTGTGATAGGCGAAT CCAACTCCCTCCTCCAAGCAGTGTTGTTGTTTTACAGAACAAACAGGTTGTTAGAAGCAGTCGATCCTTCTTTACAAGGCTATTTTCCATCTGAAGAGGC GGAAACAGTGCTTCGGATTGCTCTACTATGCGCACAAGCTTCCGTGTCGATGAGACCATCGATGAAACAAGTGACCGAGATGCTGACTAGTGATGAATGC GAAATAGGAGCTCCAAGTCAACCTCCTTTCATGAGAGCTGCAGATTTTGTGTACCCTGACGCATCGTTTAGGTCAGGGAGCACATTCAGTTCGGTATCGA ACCCGGAACCCAGCAAAGAGTCGTCTAGCCTGCTCAGCAGCTTAACAGGCGGTGGTCTATCCAGAAGTCAAGAACTAGGCTGGGCTGTTGTTTTCATGAG AGGGCGCGGGGGGGTTGTAATGTGGCCGCAAAATTTGTCAAACAGTTAG
AA sequence Show only first row Show all	>Lus10008764 pacid=23177867 polypeptide=Lus10008764 locus=Lus10008764.g ID=Lus10008764.BGIv1.0 annot-version=v1.0 MSFKYETLEKATNYFSLSKKLGQGGAGTVYIGNLPNGQTVDVKRLIFNTRQWVDEFFNEVNLISGIQHKNLVKLLGCSIEGPESLLVYEYVCNKSLDQFL FGNDHPIKENKNKATMTLDWKQRLNIIVGTAEGLTYLHGGDGVSPVRIIHRDIKSSNVLLDEDFNAKIADIGLVRHFGADKSHLSTGIAGTIGYMAPEYL VRGQLTENADVYSFGVLVLEIVCGKRCNAVIGESNSLLQAVLLFYRTNRLLEAVDPSLQGYFPSEEAETVLRIALLCAQASVSMRPSMKQVTEMLTSDEC EIGAPSQPPFMRAADFVYPDASFRSGSTFSSVSNPEPSKESSSLLSSLTGGGLSRSQELGWAVVFMRGRGGVVMWPQNLSNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	0	1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10003263 [exp]	1.4	0.7228
AT1G31040			PLATZ transcription factor fam...		Lus10038365 [exp]	1.7	0.7974
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	3.9	0.6843
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10024313 [exp]	5.7	0.6989
AT5G19090			Heavy metal transport/detoxifi...		Lus10004465 [exp]	6.7	0.6734
AT2G20410			RNA-binding ASCH domain protei...		Lus10022016 [exp]	9.2	0.6593
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10019772 [exp]	11.3	0.6776
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10015050 [exp]	13.4	0.6495
AT5G10750			Protein of unknown function (D...		Lus10020102 [exp]	15.2	0.6788
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10009303 [exp]	20.1	0.6863

Compare expression of checked genes

Lus10008764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.