Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50870 327 / 1e-114 UBC27 ubiquitin-conjugating enzyme 27 (.1.2) AT5G41700 138 / 4e-41 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT1G78870 138 / 4e-41 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT1G16890 137 / 1e-40 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT1G64230 135 / 2e-39 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT3G08690 134 / 2e-39 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT2G16740 134 / 2e-39 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT4G27960 133 / 3e-39 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G53300 132 / 6e-39 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G56150 132 / 9e-39 UBC30 ubiquitin-conjugating enzyme 30 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022248 [exp] 410 / 1e-146 AT5G50870 325 / 4e-114 ubiquitin-conjugating enzyme 27 (.1.2) Lus10017654 [exp] 140 / 1e-41 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10033611 [exp] 140 / 1e-41 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10028700 [exp] 137 / 9e-41 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 137 / 9e-41 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10014942 [exp] 132 / 7e-39 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 132 / 7e-39 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014187 [exp] 132 / 8e-39 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 132 / 8e-39 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G103400 [exp] 367 / 8e-131 AT5G50870 338 / 4e-120 ubiquitin-conjugating enzyme 27 (.1.2) Potri.012G104100 [exp] 365 / 8e-130 AT5G50870 334 / 1e-118 ubiquitin-conjugating enzyme 27 (.1.2) Potri.011G111400 [exp] 138 / 4e-41 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.001G392500 [exp] 137 / 6e-41 AT1G78870 310 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.011G168200 [exp] 135 / 4e-40 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.001G471200 [exp] 134 / 9e-40 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.016G138900 [exp] 133 / 4e-39 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 133 / 4e-39 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.019G131400 [exp] 133 / 4e-39 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.019G083800 [exp] 132 / 5e-39 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10008766 pacid=23177850 polypeptide=Lus10008766 locus=Lus10008766.g ID=Lus10008766.BGIv1.0 annot-version=v1.0 ATGTTAATCATTGTCTCTGTTGTGTTCGCATCTTGGGGGCACTTACCATTGGACCTTCAATTAGATTTATGTTTCATTCTTCTGCTGTTGCTTCGACTTC TGTTCACTTCTCCTCCACTCTTAGATTCCCCCCAGTTGAGTAGAGTGGTTGCTACTATGATTGACTTTGCCCGAGTTCAGAAGGAGCTCCAAGAATGTAG CAGAGACATTGGAGCCTCCGGCATCAAGGTTTCCCCTAACTCTGACAGTCTAGCTCGCCTCAGTGGCACCATTCCTGGCCCTATTGGCACTCCTTATGAA GGTGGCTCTTTCCAAATTGATATCTCCCTTCCAGATGGGTACCCATTCGAGCCTCCTAGAATGAAATTTGTGACGAAAGTCTGGCACCCAAATATTAGCA GTCAGAGCGGAGCTATTTGCCTTGATATCTTGAAAGACCAATGGAGCCCTGCTCTAACTCTGAAGACAGCCCTACTCTCCGTTCAAGCACTGCTCTCTGC TCCTGAGCCTGATGACCCACAAGATGCAGTAGTAGCACAGCAGTATCTCAAGGATTACCAGACCTTTGTTGGTACAGCTCGCTACTGGACAGAAACTTTT GCTAAGATCTCATCTCTCGGTGTTGAGGAAAAGGTACAGAAACTTGTTGAAATGGGATTCCCTGAAGCTTTGGTGAGGAGTACACTGGATTCAGTTGGTG GGGACGAGAACTTGGCTCTGGAGAGGCTGTGTTCTTGA
AA sequence Show only first row Show all	>Lus10008766 pacid=23177850 polypeptide=Lus10008766 locus=Lus10008766.g ID=Lus10008766.BGIv1.0 annot-version=v1.0 MLIIVSVVFASWGHLPLDLQLDLCFILLLLLRLLFTSPPLLDSPQLSRVVATMIDFARVQKELQECSRDIGASGIKVSPNSDSLARLSGTIPGPIGTPYE GGSFQIDISLPDGYPFEPPRMKFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPEPDDPQDAVVAQQYLKDYQTFVGTARYWTETF AKISSLGVEEKVQKLVEMGFPEALVRSTLDSVGGDENLALERLCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Lus10008766 [exp]	0	1
AT3G19080			SWIB complex BAF60b domain-con...		Lus10009333 [exp]	6.5	0.9331
AT1G03910			unknown protein		Lus10021530 [exp]	12.1	0.9292
AT2G41945			unknown protein		Lus10021080 [exp]	16.7	0.9132
AT1G28120			unknown protein		Lus10026630 [exp]	17.0	0.9245
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	19.2	0.9249
AT5G57370			unknown protein		Lus10001311 [exp]	19.4	0.9113
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	21.2	0.9225
AT5G37290			ARM repeat superfamily protein...		Lus10013386 [exp]	26.5	0.9140
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	27.0	0.9018
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	28.6	0.9190

Compare expression of checked genes

Lus10008766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.