Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14570 452 / 2e-156 ATNRT2.7 high affinity nitrate transporter 2.7 (.1) AT1G12940 389 / 2e-131 ATNRT2.5 nitrate transporter2.5 (.1) AT1G08100 360 / 6e-120 NRT2;2AT, ACH2, ATNRT2.2 nitrate transporter 2.2 (.1) AT1G08090 354 / 2e-117 LIN1, ACH1, NRT2;1AT, ATNRT2:1 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) AT5G60770 350 / 4e-116 ATNRT2.4 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) AT3G45060 341 / 3e-112 ATNRT2.6 ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, high affinity nitrate transporter 2.6 (.1) AT5G60780 338 / 5e-111 ATNRT2.3 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.3, nitrate transporter 2.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030588 [exp] 359 / 1e-119 AT1G12940 737 / 0.0 nitrate transporter2.5 (.1) Lus10026527 [exp] 354 / 2e-117 AT5G60770 759 / 0.0 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10030902 [exp] 353 / 2e-117 AT1G12940 751 / 0.0 nitrate transporter2.5 (.1) Lus10013042 [exp] 352 / 1e-116 AT1G12940 635 / 0.0 nitrate transporter2.5 (.1) Lus10016120 [exp] 214 / 2e-65 AT1G08090 533 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10021444 [exp] 149 / 2e-41 AT5G60770 307 / 1e-101 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10016121 [exp] 147 / 2e-39 AT1G08090 583 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10025421 [exp] 106 / 7e-27 ND 193 / 1e-59 Lus10016119 [exp] 72 / 5e-15 AT5G60770 177 / 4e-54 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348300 [exp] 494 / 2e-173 AT5G14570 509 / 1e-178 high affinity nitrate transporter 2.7 (.1) Potri.015G081300 [exp] 362 / 4e-121 AT1G12940 698 / 0.0 nitrate transporter2.5 (.1) Potri.T124708 [exp] 362 / 5e-121 AT1G12940 684 / 0.0 nitrate transporter2.5 (.1) Potri.T124608 [exp] 362 / 1e-120 AT1G12940 688 / 0.0 nitrate transporter2.5 (.1) Potri.009G008500 [exp] 348 / 5e-115 AT1G08090 830 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.009G008600 [exp] 347 / 1e-114 AT1G08090 832 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.012G087700 [exp] 343 / 4e-114 AT1G12940 640 / 0.0 nitrate transporter2.5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10008767 pacid=23177839 polypeptide=Lus10008767 locus=Lus10008767.g ID=Lus10008767.BGIv1.0 annot-version=v1.0 ATGGTAGAAGACGAACCAACAACATCCACCGCCGGCAACAAGTCCACACAATTCAACCCATTCTCTTTCTCCACCCCTCAAATCCGAGTCTTCCACCTCG CATGGATCTCCCTCTTCTCCAATTTCGTATCCACCTTCTCAATCCCTCCCTTACTCCCCCTAATCCGCTCCGACCTCCACCTCTCCCCCTCCGACGTCTC CTCATCCGCCGCCGCTTCCTTCGCCGGCTCAATCCTCTCCCGCTTCGCCATGGGCCCACTCTGCCAGCTCATCGGCCCCGTTGCCGCCACCGCCTCCCTC TCCTTCCTCACCGTCCCCGCAATCTTCGCCGTCTCCATCATCTCCTCCCCGAATTCCTTCCTCGCCGTCCGCCTCCTCGTCGGCCTCTCCCTCGGAAACT TCGTCGCCAACCAGTACTGGATGTCCTCAATTTTCTCCCCCTCCGTCGTCGCCCTCGCAAACGGCGTCTCCGCCGGCTGGGCCAACACCGGCGCCGGATT CGCCCAATTCCTCATGCCCCAGATCCACTCCCTCCTAGTCTCTTCCTTCAACCTCTCCTCCTCCGCATCCTGGCGAATCTCCTTACTCTTCCCCGGAATT CTCCAATTGATAACCGCCACGATGGTTTTACTGTACGGCCGTGAAATTAAAATTATGTCAATGGATTTGGAAACCAAAACGGCGTCGTATTCGTGGTGGG AAATTGTGGTGGAAGGAGGGATTAAGGACTACAGGGGATGGATTCTGGGGTTGGCGTACGGGTGCTCGTTCGGGTCGGAGCTCACGACGGATAATGTGGT GGCGGGTTACTTTTACGATAGGTTCGGGTTGGACCTGCGGGTTGCGGGTACGATTGCCGCGGGATTCGCGCTGACGAATTTCTTCTCGAGGCCGATGGGA GGGGTGATTTCCGACGAGATGGGGAGGAGGTTCGGGGAGAGAGGGAGGGTTTGGGGGCTGTGGGTGGTGCTGACGGCAGCCGGAGGGATGTGTGTTGTTT TAGGGAGGGCGGCGACGCTGTGGGGTTCGGTGGGGGCGATGTGCGCGTTTTCGGTGACGGTTCAGGCGGCTTCGGGGCTGGTGTTTGGAGTGGTGCCTTT CGTCTCAAAGAGGTCTATCGGAGTGATAGCGGGAATGACCGGCAGTGGAGGAACGGTGGGAGCCGTCTTAACACAGCTTCTGTTGTTTTCAGGGTCAAAA TTCTCAACACAAACCAGCATTTCTCTCATGGGGCTTATGATCATCGTCTGCACTCTCCCTGTCACCTTCCTCTACTTCCCTCCTCCTCAATCAGACGCCC CCAATGATTCAAAAGCTGAAGAAGACACTGGTGACCATTACCGATTACTGGAATGA
AA sequence Show only first row Show all	>Lus10008767 pacid=23177839 polypeptide=Lus10008767 locus=Lus10008767.g ID=Lus10008767.BGIv1.0 annot-version=v1.0 MVEDEPTTSTAGNKSTQFNPFSFSTPQIRVFHLAWISLFSNFVSTFSIPPLLPLIRSDLHLSPSDVSSSAAASFAGSILSRFAMGPLCQLIGPVAATASL SFLTVPAIFAVSIISSPNSFLAVRLLVGLSLGNFVANQYWMSSIFSPSVVALANGVSAGWANTGAGFAQFLMPQIHSLLVSSFNLSSSASWRISLLFPGI LQLITATMVLLYGREIKIMSMDLETKTASYSWWEIVVEGGIKDYRGWILGLAYGCSFGSELTTDNVVAGYFYDRFGLDLRVAGTIAAGFALTNFFSRPMG GVISDEMGRRFGERGRVWGLWVVLTAAGGMCVVLGRAATLWGSVGAMCAFSVTVQAASGLVFGVVPFVSKRSIGVIAGMTGSGGTVGAVLTQLLLFSGSK FSTQTSISLMGLMIIVCTLPVTFLYFPPPQSDAPNDSKAEEDTGDHYRLLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Lus10008767 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10028893 [exp]	5.3	0.9774
					Lus10008326 [exp]	12.0	0.9814
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	17.2	0.9793
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024627 [exp]	21.3	0.9791
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10001279 [exp]	28.3	0.9769
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10007220 [exp]	31.0	0.9767
AT1G29430			SAUR-like auxin-responsive pro...		Lus10025115 [exp]	32.2	0.9451
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	33.1	0.9658
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10008244 [exp]	33.5	0.9766
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10036732 [exp]	34.0	0.9749

Compare expression of checked genes

Lus10008767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.