Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23240 132 / 1e-35 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G42750 81 / 2e-17 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G59610 62 / 5e-11 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G09350 58 / 1e-09 NdhT, CRRJ NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) AT3G05345 56 / 5e-09 Chaperone DnaJ-domain superfamily protein (.1) AT1G71000 54 / 9e-09 Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 55 / 2e-08 DNAJ heat shock family protein (.1) AT5G18140 55 / 2e-08 Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 55 / 2e-08 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G13310 52 / 3e-08 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022246 [exp] 413 / 7e-147 AT5G23240 139 / 2e-37 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10040990 [exp] 130 / 5e-35 AT5G23240 442 / 8e-153 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10020749 [exp] 89 / 4e-20 AT2G42750 455 / 1e-161 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004485 [exp] 66 / 2e-12 AT3G05345 287 / 2e-98 Chaperone DnaJ-domain superfamily protein (.1) Lus10029916 [exp] 63 / 2e-11 AT3G05345 277 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1) Lus10017263 [exp] 55 / 4e-09 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10016510 [exp] 56 / 6e-09 AT5G59610 252 / 2e-83 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10040777 [exp] 56 / 6e-09 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10002355 [exp] 55 / 7e-09 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347600 [exp] 284 / 4e-96 AT5G23240 149 / 2e-41 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.007G072600 [exp] 127 / 1e-33 AT5G23240 461 / 4e-160 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G143400 [exp] 87 / 2e-19 AT2G42750 416 / 2e-146 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G020800 [exp] 61 / 3e-11 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 58 / 3e-10 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G123200 [exp] 59 / 9e-10 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 56 / 7e-09 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.001G072700 [exp] 56 / 8e-09 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G240700 [exp] 54 / 8e-09 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G036200 [exp] 56 / 1e-08 AT1G24120 566 / 0.0 ARG1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10008768 pacid=23177835 polypeptide=Lus10008768 locus=Lus10008768.g ID=Lus10008768.BGIv1.0 annot-version=v1.0 ATGATCCGAAACTGCAGCAGAAGTGTAGGTAATAATACAACAGGGAAAAAGAATCACTATGAGCTGTTGGGGATTTCTGTTGATTCAAGCTCCCAAGAGA TCAAAGATGCATACAGGAAGCTGCAGAAGATCTACCATCCTGATATTGCTGGAGACAAGGGCCATGAGTTTACCCTGAAGCTGAACCATGCCTATACGGT GCTGATGAGGGAAGATCTCAGGAGACAGTATGATACTTCAATTGGAGAAGGCGGAGTTGGTGTTGGCAGAAATGGCAACGTCAGCAATGGATACAGTGCT TGGAATGGTCCGTCTAGACCCCACGCTTTGTTCGTCAACGAAACTGCTTGCATAGGGTGCGGAGAATGCGCTTACCATGCAAGCAATACATTCGTCATGA ACGAAGGACTTGGCTGTGCACGAGTGAAAGTGCAGTACGGAGATGATGCAGAAAAGATTGAAGTGTCAGTTGATTCATGTCCTGTGAACTGTATCCACTG GGTCGACAGCGAAGACTTGCCATTGCTCGAGTCCTTGATTCGACCGAAACCAAAGGAAGGCTTTGGTGTATTCGGGCAAGGCTGGGAAAGACCAGCTAAC GTATTCAAGGCCGCTGATACGTTTAAAAAGCAGTTGCAGAAACAGGCAAAAGATCAACAAGACAACAGACAAGAGCCTGCTGAAGAGGAAACACCAGCTC AAGCAGCCGCTCGAGAAGCTGCTAGCACGAATATCAAGGTGGAGAGCTTCTGGTTTATATGGAATACGATCAAAGAAACCTTCAAATGA
AA sequence Show only first row Show all	>Lus10008768 pacid=23177835 polypeptide=Lus10008768 locus=Lus10008768.g ID=Lus10008768.BGIv1.0 annot-version=v1.0 MIRNCSRSVGNNTTGKKNHYELLGISVDSSSQEIKDAYRKLQKIYHPDIAGDKGHEFTLKLNHAYTVLMREDLRRQYDTSIGEGGVGVGRNGNVSNGYSA WNGPSRPHALFVNETACIGCGECAYHASNTFVMNEGLGCARVKVQYGDDAEKIEVSVDSCPVNCIHWVDSEDLPLLESLIRPKPKEGFGVFGQGWERPAN VFKAADTFKKQLQKQAKDQQDNRQEPAEEETPAQAAAREAASTNIKVESFWFIWNTIKETFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10008768 [exp]	0	1
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10022246 [exp]	1.0	0.9386
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10021067 [exp]	1.4	0.9286
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	3.9	0.8998
					Lus10024153 [exp]	5.3	0.8597
AT3G52070			unknown protein		Lus10029504 [exp]	5.7	0.8935
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	7.1	0.8512
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	7.7	0.8812
AT5G45360			F-box family protein (.1)		Lus10007767 [exp]	8.6	0.8113
AT5G52780			Protein of unknown function (D...		Lus10038849 [exp]	9.5	0.8455
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10041319 [exp]	12.8	0.8509

Compare expression of checked genes

Lus10008768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.