Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50170 260 / 5e-86 ATSIRB sirohydrochlorin ferrochelatase B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022245 [exp] 311 / 6e-107 AT1G50170 265 / 3e-91 sirohydrochlorin ferrochelatase B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G178800 [exp] 269 / 7e-90 AT1G50170 253 / 7e-86 sirohydrochlorin ferrochelatase B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0043 [flax] [poplar] Chelatase PF01903 [flax] [poplar] CbiX CbiX
Representative CDS sequence Show only first row Show all	>Lus10008769 pacid=23177857 polypeptide=Lus10008769 locus=Lus10008769.g ID=Lus10008769.BGIv1.0 annot-version=v1.0 ATGAGCCTGAGTTCTTCCAACGGCGGATTAGGGAAGAGCCTTCATGGGATTGGAGAGGACGACGGCGTCATCATTGTCGACCATGGGTCCCGGCGGAAGG AATCTAATTCCATGCTAAATGAATTCGTGGCTATGTTTAAGGATAAAACTGGATACCCGATTGTCGAGCCAGCTCATATGGAGTTGGCAGAACCCTCAAT AAAAGATGCATTTGGTATGTGTGTTCAAAAAGGTGCAAAGCGTGTTGTTGTCAGCCCATTCTTCCTTTTCCCAGGACGCCATTGGCACCAGGATATTCCG TCATTAACTGCTGAAGCTGCAAAAGAGCACCCGGGTGTCTCATATCTCATAACCGCACCTCTTGGGTTGCACGAGCTGCTCGTGTTTTTTGGTGGCTGTG GCCACGCCGCAGCGGCAGCCGCATTTTGCTCTGCGACTGACATAGACACCAACAGAGCAGAGCATTCAGCTCCCGCTATCTATAACCACCGGCAAAAAGC ACCGGACACAGATGCCGATAGGGTCCTTACCGTGGATGAAGCGGGAAGAAACCTACAACCCCATTCCCTAAAACTTCCACTGGGCCGTTCCAAAAACAAG TCTTTAGCTGCAAGGATGAGCCTGAGTTCTTCCAACGGCGGATTAGGGAAGAGCCTTCATGGGATTGGAGAGGACGACGGCGTCATCATTGTCGACCATG GGTCCCGGCGGAAGGAATCTAATTCCATGCTAAATGAATTCGTGGCTATGTTTAAGGATAAAACTGGATACCCGATTGTCGAGCCAGCTCATATGGAGTT GGCAGAACCCTCAATAAAAGATGCATTTGGTATGTGTGTTCAAAAAGGTGCAAAGCGTGTTGTTGTCAGCCCATTCTTCCTTTTCCCAGGACGCCATTGG CACCAGGATATTCCGTCATTAACTGCTGAAGCTGCAAAAGAGCACCCGGGTGTCTCATATCTCATAACCGCACCTCTTGGGTTGCACGAGCTGCTCGTGG ATGTGGTGAATGATAGGATCAGATACTGTTTAAGTCATGTCTCTGGAGATGTCGATGAATGTGAAGTTTGTGTTGGTACGAACAAGTGCAAGCTCAACTC CAACGAGTAG
AA sequence Show only first row Show all	>Lus10008769 pacid=23177857 polypeptide=Lus10008769 locus=Lus10008769.g ID=Lus10008769.BGIv1.0 annot-version=v1.0 MSLSSSNGGLGKSLHGIGEDDGVIIVDHGSRRKESNSMLNEFVAMFKDKTGYPIVEPAHMELAEPSIKDAFGMCVQKGAKRVVVSPFFLFPGRHWHQDIP SLTAEAAKEHPGVSYLITAPLGLHELLVFFGGCGHAAAAAAFCSATDIDTNRAEHSAPAIYNHRQKAPDTDADRVLTVDEAGRNLQPHSLKLPLGRSKNK SLAARMSLSSSNGGLGKSLHGIGEDDGVIIVDHGSRRKESNSMLNEFVAMFKDKTGYPIVEPAHMELAEPSIKDAFGMCVQKGAKRVVVSPFFLFPGRHW HQDIPSLTAEAAKEHPGVSYLITAPLGLHELLVDVVNDRIRYCLSHVSGDVDECEVCVGTNKCKLNSNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50170		ATSIRB	sirohydrochlorin ferrochelatas...		Lus10008769 [exp]	0	1
AT3G12620			Protein phosphatase 2C family ...		Lus10023470 [exp]	2.4	0.8308
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10033788 [exp]	3.0	0.8045
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014461 [exp]	3.5	0.8176
AT5G56460			Protein kinase superfamily pro...		Lus10013406 [exp]	4.7	0.8358
AT3G12620			Protein phosphatase 2C family ...		Lus10040346 [exp]	5.5	0.7862
AT5G60580			RING/U-box superfamily protein...		Lus10037410 [exp]	5.9	0.8138
AT5G11960			Protein of unknown function (D...		Lus10004444 [exp]	6.3	0.8049
AT1G29690		CAD1	constitutively activated cell ...		Lus10025153 [exp]	11.1	0.8173
AT3G24530			AAA-type ATPase family protein...		Lus10023642 [exp]	19.4	0.7644
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	19.6	0.7829

Compare expression of checked genes

Lus10008769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.