Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14550 504 / 7e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G62305 337 / 8e-114 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G11940 337 / 1e-113 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G57270 187 / 3e-55 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT4G31350 181 / 2e-53 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10280 181 / 9e-53 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 181 / 1e-52 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 177 / 3e-51 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 175 / 1e-50 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G19160 172 / 1e-49 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022242 [exp] 653 / 0 AT5G14550 554 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10035297 [exp] 335 / 1e-112 AT1G11940 371 / 4e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030027 [exp] 324 / 2e-108 AT1G11940 369 / 1e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020037 [exp] 322 / 8e-108 AT1G11940 442 / 2e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10015553 [exp] 318 / 8e-106 AT1G11940 437 / 9e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025464 [exp] 187 / 2e-55 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10026959 [exp] 180 / 1e-52 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10040972 [exp] 178 / 1e-51 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10013427 [exp] 176 / 6e-51 AT1G10280 528 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348400 [exp] 545 / 0 AT5G14550 509 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G009500 [exp] 342 / 9e-116 AT1G62305 428 / 7e-150 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.002G227000 [exp] 304 / 2e-100 AT1G11940 369 / 7e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 187 / 3e-55 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G076600 [exp] 184 / 2e-54 AT2G19160 560 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 183 / 5e-54 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G143900 [exp] 180 / 9e-53 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 178 / 7e-52 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 174 / 1e-50 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 174 / 2e-50 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10008770 pacid=23177842 polypeptide=Lus10008770 locus=Lus10008770.g ID=Lus10008770.BGIv1.0 annot-version=v1.0 ATGAAGCAGAGGAAGGCAGCGCAGCACCAGCACCATCACCATCACAAATCTAACTTCAAATGGAGGAGGAAGCTGTTTGCGGCTCTGTTGCTAGGGTTCT GCTTCGGAAGTTTGTTCCTTTTGCAGACCCACTACAGTCAAATCATGGCCCTCTCCGCTCTCAAGGCGCGGTTTCGTCACGAGCAGCAGCTGCCGAAGAT CGCCTTCCTGTTTATCGCTCGGAATCGCCTCCCTCTTGATGTGGTCTGGGATGCGTTTTTCAAGGGTGAGGAGTCGAGGTTTTCAATTCTTGTTCACTCC AGGCCTGGATTCCTATTCAACAAAGCAACAACGAGGTCTGACTATTTCTTGGATCGCCAAGTTAATGATAGCATTCAGGTAGATTGGGGAGAAGCTACAA TGATCGAAGCAGAACGTATCTTACTTAGACATGCACTTGAGGAACCTTCAAATAAGCGCTTTGTTTTCCTCTCAGACAGCTGCATACCACTTTACAACTT CAGCTACACATATGACTATGTCATGTCAACATCAACCAGTTTTGTAGACAGCTTTGCTGATACAAAAGATGGTCGCTATAATCCAAAAATGGGTCCCATC ATTCCAGTACGTAACTGGAGGAAAGGATCTCAGTGGGTTGTTCTGACCAGAAAACACGCGGAGGCTGTAGTGCACGATGGTGCCGTCTTTCCTGTTTTCC AAAAACATTGCAGGCGGAAATCGCTTCCTGAGTTCTGGCGGGATCAACCCTTTCCTGCTGATCCATCCAAAGAGCACAACTGTATACCTGATGAACACTA TGTCCAAACATTATTGGCTCAAAAAGGCCTTGAAGGAGAGTTGACACGAAGATCATTGACACACAGTTCATGGGACCTTTCGTCCTCCAAAGACCCCAAA CGTCGTGGATGGCATCCTCTTACCTATAAGTATTCTGATGCAACTCCGATGCTTTTGCAATCTATAAAGGATATCGATAACATATATTATGAGACTGAAT ACCGAAGAGAGTGGTGCACAAGCAAAGGGAAGCCAAGTACATGCTTCCTTTTTGCTAGAAAGTTCACACGTCCTGCTGCTCTCCGCCTCCTCAATATGGA GTGCATAAAGCAGATGGTGATCCCCCCTGAGGGCGGTGTAGGTAATTGCTTTACTTGCTGTCAGGTTTACGAACAATAA
AA sequence Show only first row Show all	>Lus10008770 pacid=23177842 polypeptide=Lus10008770 locus=Lus10008770.g ID=Lus10008770.BGIv1.0 annot-version=v1.0 MKQRKAAQHQHHHHHKSNFKWRRKLFAALLLGFCFGSLFLLQTHYSQIMALSALKARFRHEQQLPKIAFLFIARNRLPLDVVWDAFFKGEESRFSILVHS RPGFLFNKATTRSDYFLDRQVNDSIQVDWGEATMIEAERILLRHALEEPSNKRFVFLSDSCIPLYNFSYTYDYVMSTSTSFVDSFADTKDGRYNPKMGPI IPVRNWRKGSQWVVLTRKHAEAVVHDGAVFPVFQKHCRRKSLPEFWRDQPFPADPSKEHNCIPDEHYVQTLLAQKGLEGELTRRSLTHSSWDLSSSKDPK RRGWHPLTYKYSDATPMLLQSIKDIDNIYYETEYRREWCTSKGKPSTCFLFARKFTRPAALRLLNMECIKQMVIPPEGGVGNCFTCCQVYEQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10008770 [exp]	0	1
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	5.5	0.8962
AT5G57830			Protein of unknown function, D...		Lus10010774 [exp]	8.1	0.9010
AT5G58300			Leucine-rich repeat protein ki...		Lus10035012 [exp]	9.4	0.8814
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10004881 [exp]	9.5	0.8050
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	12.6	0.8841
AT2G24370			Protein kinase protein with ad...		Lus10026989 [exp]	18.4	0.8574
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10023407 [exp]	22.2	0.8584
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Lus10031290 [exp]	22.4	0.8750
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	23.0	0.8532
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10031944 [exp]	23.1	0.8324

Compare expression of checked genes

Lus10008770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.