Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14680 190 / 1e-61 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G01520 178 / 7e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G58450 58 / 2e-10 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G11930 50 / 2e-07 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT1G09740 47 / 2e-06 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G62550 46 / 3e-06 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G68300 45 / 7e-06 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G03270 42 / 6e-05 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G17020 40 / 0.0004 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014545 [exp] 204 / 4e-67 AT5G14680 295 / 6e-104 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10032142 [exp] 203 / 2e-66 AT5G14680 296 / 3e-104 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10034337 [exp] 49 / 5e-07 AT1G68300 164 / 2e-52 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10029310 [exp] 48 / 1e-06 AT3G11930 197 / 2e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10041436 [exp] 47 / 1e-06 AT1G68300 159 / 2e-50 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10009272 [exp] 43 / 5e-05 AT1G09740 227 / 6e-77 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10006701 [exp] 43 / 6e-05 AT2G47710 218 / 1e-73 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10007043 [exp] 40 / 0.0005 AT2G47710 214 / 2e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G071700 [exp] 184 / 4e-59 AT5G14680 298 / 6e-105 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.008G121900 [exp] 63 / 2e-12 AT1G68300 188 / 5e-62 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.016G064000 [exp] 58 / 2e-10 AT3G11930 214 / 4e-71 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.010G123200 [exp] 56 / 9e-10 AT1G68300 173 / 5e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.008G121800 [exp] 53 / 1e-08 AT1G68300 146 / 3e-45 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G123400 [exp] 51 / 6e-08 AT1G68300 115 / 3e-33 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.006G198200 [exp] 51 / 7e-08 AT3G11930 209 / 9e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.008G221300 [exp] 50 / 2e-07 AT2G47710 199 / 2e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.005G015200 [exp] 49 / 3e-07 AT3G62550 156 / 4e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G144100 [exp] 49 / 4e-07 AT3G17020 234 / 3e-80 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10008772 pacid=23177869 polypeptide=Lus10008772 locus=Lus10008772.g ID=Lus10008772.BGIv1.0 annot-version=v1.0 ATGGGGAGTGAACTGATCAAGTATGAAATCACAGTTCCCGCGTTGTTGCTACTTGCCGAGACTTGTCTGAAGAGCAAGAGAGGGAGGCGAGATTTGAGTG GCGAAGGAAACCACATGAAGATGGAAGAAGAGCATCCTCCTACTCGGATATTGATAGCGGTGAACGAGGCAACAGTGATGAGCAACAACCCACATCCTTC CATTAGTTGCAGAGGTGCATTCGAGTGGACTCTCGACCACATTGTTCGTTCCAACTTTTCTGGATTCAGCCTTCTCTTCCTTAACGTTCAACCCACCTAC GAACAAGGTTTTGAAGGCATGATGGATGGGATATACACATGTCCAGATGATTTCAGGCAGTTGGCTAGCAGAAACAAGGCTAGATCTGTTCAGCTGCTGG AGTACTTTGTTGATAGATGCCATGCACTTGGGATTGCTTGTGAGGCGTGGATTAAGATGGGTGATCCAACAGTAGAGATATGTGGTGAGGCGAGACGAGT GCAGCCAGACTTTGTTGTTGTTGGGAGCAGGAGACACGCATCTTACAGGAGGGCAGCGTTGGAATCTGTGAGTGATCATGTTGAGAAATATAAAGAGTGC CATGTGATTGTCATCACTCGCAATGCTCATGAAGCCACCAGAGGATCCAGTTCCAGACTGACCGACTCCATGTGA
AA sequence Show only first row Show all	>Lus10008772 pacid=23177869 polypeptide=Lus10008772 locus=Lus10008772.g ID=Lus10008772.BGIv1.0 annot-version=v1.0 MGSELIKYEITVPALLLLAETCLKSKRGRRDLSGEGNHMKMEEEHPPTRILIAVNEATVMSNNPHPSISCRGAFEWTLDHIVRSNFSGFSLLFLNVQPTY EQGFEGMMDGIYTCPDDFRQLASRNKARSVQLLEYFVDRCHALGIACEAWIKMGDPTVEICGEARRVQPDFVVVGSRRHASYRRAALESVSDHVEKYKEC HVIVITRNAHEATRGSSSRLTDSM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14680			Adenine nucleotide alpha hydro...		Lus10008772 [exp]	0	1
AT2G36710			Pectin lyase-like superfamily ...		Lus10027737 [exp]	3.7	0.7958
AT2G36220			unknown protein		Lus10022709 [exp]	6.2	0.7769
					Lus10009493 [exp]	16.7	0.7359
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	22.0	0.7457
AT3G23050	AUX_IAA	AXR2, IAA7	AUXIN RESISTANT 2, indole-3-ac...		Lus10002724 [exp]	25.9	0.7531
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	29.2	0.7415
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	39.0	0.7311
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	50.3	0.7140
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	54.9	0.7131
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	62.4	0.7171

Compare expression of checked genes

Lus10008772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.