Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14700 221 / 4e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G30470 121 / 3e-33 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G23910 120 / 5e-33 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 78 / 5e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 74 / 2e-15 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G09480 70 / 5e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 68 / 2e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 67 / 5e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 61 / 4e-11 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT2G02400 61 / 6e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022239 [exp] 387 / 1e-136 AT5G14700 374 / 4e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003780 [exp] 127 / 2e-35 AT2G23910 414 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006885 [exp] 125 / 1e-34 AT2G23910 417 / 8e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020372 [exp] 109 / 8e-29 AT2G23910 226 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024068 [exp] 78 / 2e-16 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10041651 [exp] 76 / 4e-16 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10008668 [exp] 72 / 6e-15 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035016 [exp] 72 / 7e-15 AT1G68540 468 / 2e-167 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10009955 [exp] 72 / 1e-14 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349600 [exp] 279 / 4e-94 AT5G14700 372 / 3e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G110500 [exp] 139 / 6e-40 AT5G14700 228 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G105000 [exp] 134 / 7e-38 AT5G14700 213 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G140700 [exp] 119 / 1e-32 AT2G23910 265 / 4e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G093700 [exp] 119 / 1e-32 AT2G23910 264 / 1e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G079500 [exp] 114 / 1e-30 AT2G23910 261 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G100500 [exp] 113 / 3e-30 AT2G23910 438 / 4e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G178700 [exp] 111 / 2e-29 AT4G30470 416 / 1e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G138600 [exp] 78 / 7e-17 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.001G256400 [exp] 74 / 2e-15 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008774 pacid=23177854 polypeptide=Lus10008774 locus=Lus10008774.g ID=Lus10008774.BGIv1.0 annot-version=v1.0 ATGGGGGAAATAGAAGTGAAGGCAGCAGAGAACGTGGTGGAGGCATGCTCAGCAACTCCATCAGTGAGGAGCTGTGTGGTGACTTCATCGCTTCTGGCCT GCATTTGGCGAGACAGCACCTTGCAGGATTACCCTTGTGTCATCAACCACAACTCCTGGAGCGACGAATCACTTTGCAGAGATAAAAGGCTGTGGTATGC ATTGGGGAAGCTGAGAGCGGAAAAAGCAGCTTGGAGTAAAGCAAAAGAGAAAGGGGTAAAACTGGCGACTATCTGCCCGGGACTCGTCACTGGTCCTGAA TTCTTCGCCAGAAATCCAACATCAACAGTCGCCTACTTAAAAGGAGCACAAGAAATGTTTGCAGATGGGCTGCTAGCAACAGTGGATATAATGAAGGTAG CAGAAGCACATGTGTGTGTGTACGAGGGGATGAGGAAGACGGCAGGTGGGAGGTACGTATGCTACGATAAGGTGATAGAGAGGGAGGAGGAGGCGGAGAA GCTGGCGGAAGAAGTTGGGATGCCGGCGGAGAGGATATGTGGGGAAAGAGGGGAATATATTCCAGCCCCATTCCAGTTATCAAACAGGAAGCTTTCTAAC CTCATGTCCACAACTCTTCGTACTTGTTACAATCACAGCTGA
AA sequence Show only first row Show all	>Lus10008774 pacid=23177854 polypeptide=Lus10008774 locus=Lus10008774.g ID=Lus10008774.BGIv1.0 annot-version=v1.0 MGEIEVKAAENVVEACSATPSVRSCVVTSSLLACIWRDSTLQDYPCVINHNSWSDESLCRDKRLWYALGKLRAEKAAWSKAKEKGVKLATICPGLVTGPE FFARNPTSTVAYLKGAQEMFADGLLATVDIMKVAEAHVCVYEGMRKTAGGRYVCYDKVIEREEEAEKLAEEVGMPAERICGERGEYIPAPFQLSNRKLSN LMSTTLRTCYNHS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10008774 [exp]	0	1
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10008775 [exp]	28.9	0.5545
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10015050 [exp]	101.8	0.4879
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10021039 [exp]	106.5	0.4875
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024771 [exp]	169.0	0.4461
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013883 [exp]	199.4	0.4503
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10020822 [exp]	249.4	0.4360

Compare expression of checked genes

Lus10008774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.