Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14700 72 / 2e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022239 [exp] 198 / 3e-62 AT5G14700 374 / 4e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008029 [exp] 45 / 4e-06 ND / Lus10041031 [exp] 40 / 0.0008 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349600 [exp] 118 / 2e-31 AT5G14700 372 / 3e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G105000 [exp] 52 / 8e-08 AT5G14700 213 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G110500 [exp] 46 / 7e-06 AT5G14700 228 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008775 pacid=23177833 polypeptide=Lus10008775 locus=Lus10008775.g ID=Lus10008775.BGIv1.0 annot-version=v1.0 ATGAATAGTTATGTGGAGACCCCCGTGAGTCGCGCGGGAAAGTGGCCGGCCGGTCGCCGGAGCATCGACGGAAAATTGTCGGTCGGTCACCGGAGTATTG CCGGAAAGTTATCAGTCGGTAACGGGGTCTCGCCGGAAAAGCATCGGCCGGTAACCGGGGTCTCGCCGGAAATCTACCGGCCAGTGATCATAATCTTGCC GGAAAAATCACCGGATGGTGACCGAAAATTCGCTGGCCGGTCAACGTCGACGATGAGACACAGTTTTAGCTCTACCCGCCGCCGGAGGGTAGGTTTTTGC AGTGGAAAAAATATGGGATTCATTCCGACGGAGGAGAGCCGCAAGAATGAGATTGAGGATTTCAAACGCATGCTGGTTGCCTGCGCCGGACTCAGCCGAA GGAAAGACCAAGAGGAACAGTTCCGCTCACCAGAATTTGACGACAACGACGGTAGTGAAAAGATTGTGTGCGTCACCAGCGGAGTTTCCTTCTTAGGCCT TGCCGTCGTCAAGCGCCTCGTTATCCGCGGTTACTCTGTCCGAATCCTCGTCGACAACCAAGAGGATGTGGAGAAGTTGAGGGAGGTGGAGAGAAGGCAA AACAGCAATAGCGGCGTGGTGGCGGTGGANNNNNNNNNNNNNNNNGTGTGGGCGTTAGAGCATTGA
AA sequence Show only first row Show all	>Lus10008775 pacid=23177833 polypeptide=Lus10008775 locus=Lus10008775.g ID=Lus10008775.BGIv1.0 annot-version=v1.0 MNSYVETPVSRAGKWPAGRRSIDGKLSVGHRSIAGKLSVGNGVSPEKHRPVTGVSPEIYRPVIIILPEKSPDGDRKFAGRSTSTMRHSFSSTRRRRVGFC SGKNMGFIPTEESRKNEIEDFKRMLVACAGLSRRKDQEEQFRSPEFDDNDGSEKIVCVTSGVSFLGLAVVKRLVIRGYSVRILVDNQEDVEKLREVERRQ NSNSGVVAVXXXXXXVWALEH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10008775 [exp]	0	1
AT5G58610			PHD finger transcription facto...		Lus10003352 [exp]	8.0	0.7300
AT5G18610			Protein kinase superfamily pro...		Lus10015051 [exp]	24.5	0.6405
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Lus10040267 [exp]	28.1	0.6378
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10008774 [exp]	28.9	0.5545
AT3G24060			Plant self-incompatibility pro...		Lus10011754 [exp]	39.9	0.6514
AT1G48170			unknown protein		Lus10022783 [exp]	50.1	0.6302
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024772 [exp]	194.2	0.5588
					Lus10016313 [exp]	206.1	0.5600
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10008900 [exp]	208.4	0.5529
AT5G11630			unknown protein		Lus10011623 [exp]	229.7	0.5385

Compare expression of checked genes

Lus10008775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.