Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27870 1509 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 1369 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 1348 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G25610 1338 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 1311 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G17500 1139 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1127 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1122 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1117 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 873 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022238 [exp] 1946 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10019152 [exp] 1331 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 1286 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1178 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 1139 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 1135 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 1131 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 1058 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 866 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349100 [exp] 1479 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 1370 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 1340 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 1335 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 1108 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 1102 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1058 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G191400 [exp] 868 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.010G039900 [exp] 866 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 634 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10008776 pacid=23177849 polypeptide=Lus10008776 locus=Lus10008776.g ID=Lus10008776.BGIv1.0 annot-version=v1.0 ATGGGAAGGAGGAGGAAGTTGTTGCGGTTTAGCAAGTTGTACTCTTTTTCATGCTTCAAAGCATCTTTTGAGGATGATCATGCTCAAATCGGGAGGAAAG GTTACTCTAGGGTGGTGTATTGCAATGACCCTGACAGTCCAGAATCAGTTGAGCTTAATTACAAAGGCAATTACGTCTCCACCCCCAAATACCCGGCCGC TAACTTTATTCCCAAGTCTCTGTTTGAGCAGTTCAGGCGGGTTGCCAACATTTATTTTCTTGTTGTGGCTTGTGTCTCTTTTAGTCCATTGGCACCTTAT AACGCTAAAAGTATTCTTGCACCTCTGGTTGTGGTCATTGGAGCTACCATGGTCAAAGAAGCTGTCGAAGATTGGAGAAGGAGAAAACAGGATGTAGAAG CTAATAATAGAAAGGTGAAAGTGTTGGGTAAGAATTCCACATTCACACAGACTAGATGGAAGCATCTCCTAGTTGGAGATATTGTTGAAGTGGATAAGGA TCAGTATTTCCCTGCTGATCTTCTTCTGCTCTCTTCGAGCTATGATGATGGAGTTTGTTACGTCGAGACAATGAATTTGGATGGAGAGACTAACTTAAAG TTAAAGCATGCTCTGGAGTTCACTTCCTCACTGCACGATGAAGGAGGTTTAAAGGAATTCAAGGCTGTGATCAAGTGCGAGGACCCAAACGAGAATCTTT ATTCATTTGTGGGGACACTTCATTACAATAGAAGTCAGTATCCACTTTCACCGCAGCAGATTCTTTGGAGGGATTCAAAGCTTAAGAATACGGAGTATGT ATACGGTGTTGTTATCTTTACCGGGAACGACACTAAGGTGATGCAGAATTCCGTGGATCCTCCTTCTAAGAGGAGCAAAATCGAGAAGACAATGGACAAG ATCATTTATATCCTTTTCAGCGCTCTGATTACTGTATCGTTTATTGGGTCTCTATTTTTCGGTATCGAGACCAGTAGAGATTATGAAGATGGGAAATATA GGAGGTGGTATCTTCAGCCGGATAACAGAAATGCTCTTTATGGTCCTGAAAGAGCTCCACTTGCTGCTTTGCTCCACTTCTTAACAGGACTCATGCTGTA TGGATATTTAATACCCATATCACTGTATGTGTCTATTGAAATAGTGAAGGTCTTACAAAGCATCTTCATTAACCAAGATCAGGAAATGTACCATGCGGAA GCTGACAGGCCAGCTCGTGCACGTACTTCTAATTTAAATGAGGAACTTGGGCAGGTTGATACTGTGCTCTCTGACAAGACTGGCACATTGACATGTAATT CAATGGAGTTCGTGAAATGTTCAATTGCTGGGAATCCATATGGCAGGGGTATGACAGAAGTGGAATGGGCCTTATTGCAGAGAAAAAATGGCAAGCCAGT AGATGTCGGTGACAGGCCGAATGACTCAGGTGACTCGGGAAAGCCTGTGAAGGGATTTAACTTCATAGATGAACGCATAATGAATGGACAGTGGATTCAT GAACAATATTCCAACTGTATACAGATGTTCTTTCAAGTACTAGCACTATGCAATACAGCTGTTCCTGAGGAAAACAAAGAGTCTCATGAAATTTCTTATG AAGCTGAATCACCGGATGAAGCAGCCTTTGTCGTAGCTGCTAAGGAGATGGGATTCGAGTTGTATGAAAGAACACAAACGACCATATCATTGCATGAGTT GGATCCTGCATCTGGCAGACGAGTTGATAGAGTATACAAGGTTCTTCATGTTATGGAATTCAGTAGTTCTCGCAAAAGAATGTCTGTGATCGTAAGGAGC ATGGAAAATCAACTGTTACTTCTATCCAAGGGTGCAGACAGCGTGATGTTTGATAGGCTTTCGAAGCATGGGCGCGTATTTGAGGCAGAGACCAAGGATC ACATAAAAAAATATGCCGAGGCGGGTCTTCGAACCCTGGTCATTGCCTTCCGTAAGCTTGATGAAACTGAGTATGGTAATTGGGAAGCAGAATTTACAAA AGCCAAAACAGCAGAAACTGCGGACCGTGATGTTTTGGTGGATGAACTCGCTGATAAGATTGAAAAGGATTTAGTTCTGCTTGGTGCTACTGCTGTCGAG GACAAACTGCAAAAAGGGGTTCCAGAATGCATTAACAAGCTTTCACAGGCAGGAATTAATATATGGGTTATCACTGGTGATAAGATGGAGACAGCGATAA ATATCGGGTATGCTTGTAGTCTACTAAGACAAGGAATGAAACAAATTACAATCTCGTTAGAGTTGCCAGAGATTGAAGCCTTGGAGAAACAGGGGGATAA AGATGTCGCTTCTAAGGCTTCTCTGGAAAGTGTAATGAAGCAAATCAACGACGGAAGAGCCCTTCTGAATTCTGCCAAAGGAAGCTCAATGGAGTTTAGT TTAGTGATTGATGGGAAGTCTTTGGGTTATGCCCTTGATGAGAACCTGGAGAAGTCGTTTCTGGAGCTCGCGCTTGATTGTGCTTCAGTCATATGTTGCC GGTCTACTCCTAAACATAAGGCTCTTGTCACAAGATTGGTTAAAACAAGAACGGGTAAAATAACATTGGCCATTGGCGATGGGGCAAATGACGTGGGCAT GCTTCAGGAAGCTGACATAGGAGTCGGCATAAGTGGTGCTGAAGGAATGCAGGCGGTGATGGCAAGTGATTACTCGATAGCACAATTCCGTTTTCTAGAA CGGTTGTTACTGGTTCATGGTCATTGGTGCTACAGGAGAATAGCTATGATGATTTGTTACTTCTTCTACAAGAACATTGCATTCGGATTTACGTTATTTT GGTATGAAGCGTATGCATCTTTCTCCGGTCAGCCTGCATATAACGACTGGTATATGTCATTCTACAACGTCTTCTTCACATCATTTCCAGTAATCGCACT TGGAGTTTTCGATCAGGATGTTTCTGCTAGGCTTTGCCTTAAGGTACAAGCAACCGTCCCTTTCCTTTGTTATTATCAATGTTTCCTAAAACGATATAGC TACACCATTAACAGACTACTCACTGCAGTATCCGGTATTATATCAAGAAGGCGTACAGAACATCCTCTTCAGCTGGTCCCGTATCCTAGGCTGGATGTGC AATGGAGTCCTGACATCCATTATCATCTTCTTCTTCACCACCAACTCCTTGATCAATCAAGCACTCCGAGAAGATGGGCAAGTAACCGACTATGCGATCC TGGGAGCAACAATGTACACATGCGTGGTGTAGACATGCGTGGTGTGGACAGTTAA
AA sequence Show only first row Show all	>Lus10008776 pacid=23177849 polypeptide=Lus10008776 locus=Lus10008776.g ID=Lus10008776.BGIv1.0 annot-version=v1.0 MGRRRKLLRFSKLYSFSCFKASFEDDHAQIGRKGYSRVVYCNDPDSPESVELNYKGNYVSTPKYPAANFIPKSLFEQFRRVANIYFLVVACVSFSPLAPY NAKSILAPLVVVIGATMVKEAVEDWRRRKQDVEANNRKVKVLGKNSTFTQTRWKHLLVGDIVEVDKDQYFPADLLLLSSSYDDGVCYVETMNLDGETNLK LKHALEFTSSLHDEGGLKEFKAVIKCEDPNENLYSFVGTLHYNRSQYPLSPQQILWRDSKLKNTEYVYGVVIFTGNDTKVMQNSVDPPSKRSKIEKTMDK IIYILFSALITVSFIGSLFFGIETSRDYEDGKYRRWYLQPDNRNALYGPERAPLAALLHFLTGLMLYGYLIPISLYVSIEIVKVLQSIFINQDQEMYHAE ADRPARARTSNLNEELGQVDTVLSDKTGTLTCNSMEFVKCSIAGNPYGRGMTEVEWALLQRKNGKPVDVGDRPNDSGDSGKPVKGFNFIDERIMNGQWIH EQYSNCIQMFFQVLALCNTAVPEENKESHEISYEAESPDEAAFVVAAKEMGFELYERTQTTISLHELDPASGRRVDRVYKVLHVMEFSSSRKRMSVIVRS MENQLLLLSKGADSVMFDRLSKHGRVFEAETKDHIKKYAEAGLRTLVIAFRKLDETEYGNWEAEFTKAKTAETADRDVLVDELADKIEKDLVLLGATAVE DKLQKGVPECINKLSQAGINIWVITGDKMETAINIGYACSLLRQGMKQITISLELPEIEALEKQGDKDVASKASLESVMKQINDGRALLNSAKGSSMEFS LVIDGKSLGYALDENLEKSFLELALDCASVICCRSTPKHKALVTRLVKTRTGKITLAIGDGANDVGMLQEADIGVGISGAEGMQAVMASDYSIAQFRFLE RLLLVHGHWCYRRIAMMICYFFYKNIAFGFTLFWYEAYASFSGQPAYNDWYMSFYNVFFTSFPVIALGVFDQDVSARLCLKVQATVPFLCYYQCFLKRYS YTINRLLTAVSGIISRRRTEHPLQLVPYPRLDVQWSPDIHYHLLLHHQLLDQSSTPRRWASNRLCDPGSNNVHMRGVDMRGVDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27870			ATPase E1-E2 type family prote...		Lus10008776 [exp]	0	1
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10005988 [exp]	10.2	0.7518
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10033927 [exp]	19.4	0.7472
AT5G66630		DAR5	DA1-related protein 5 (.1)		Lus10033300 [exp]	24.0	0.7298
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10002490 [exp]	24.3	0.7215
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10033386 [exp]	47.5	0.6982
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012030 [exp]	63.5	0.7160
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10027025 [exp]	67.7	0.6864
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10022986 [exp]	80.2	0.6769
AT2G03140			alpha/beta-Hydrolases superfam...		Lus10034894 [exp]	81.9	0.6931
AT1G19270		DA1	DA1 (.1)		Lus10010033 [exp]	114.1	0.6741

Compare expression of checked genes

Lus10008776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.