Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18240 499 / 2e-176 Ribosomal protein S24/S35, mitochondrial (.1.2) AT4G21460 488 / 2e-172 Ribosomal protein S24/S35, mitochondrial (.1) AT1G73770 52 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022237 [exp] 796 / 0 AT3G18240 513 / 0.0 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10020495 [exp] 282 / 1e-93 AT3G18240 233 / 8e-75 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10012471 [exp] 178 / 3e-54 AT3G18240 109 / 2e-28 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10012470 [exp] 0 / 1 AT3G18240 96 / 2e-25 Ribosomal protein S24/S35, mitochondrial (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G044100 [exp] 555 / 0 AT3G18240 461 / 2e-161 Ribosomal protein S24/S35, mitochondrial (.1.2) Potri.012G046000 [exp] 70 / 3e-14 AT1G73770 / unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0337 [flax] [poplar] RF PF10213 [flax] [poplar] MRP-S28 Mitochondrial ribosomal subunit protein
Representative CDS sequence Show only first row Show all	>Lus10008778 pacid=23177840 polypeptide=Lus10008778 locus=Lus10008778.g ID=Lus10008778.BGIv1.0 annot-version=v1.0 ATGCGGCAATCTTTGTTGCGAAACTTCACTTGGCGTCTCCTTCATTCTTCTCGCAATGTCGGATCCTCAATCACCAATCTTTCAATCGTCCCTTTGCCGG CTGCTTCTGCTAGTTCCATACTTAGGTTGTACTCGTCCGAGTCCGGCGAGAAGCCCGGCCCCGTCCCCGAGTCATCAGCATTGGCGCAGGTCCGGAAGGA AGACGAGTCTCGGCAAGTAGAGGACGTGAGTAATAAAGACTTGAAGGAAATGATGGAGAAGTACTTCAAAGGTGAAGAGGACGTGCTTCCTTTAATCATG GAATCAATTCTGCAAAGGAGGTTGTCTGGGAAGCATGAAGAAACTGATGACGAGTTGATGGAGGAACTGCGTATGAAGCCATTGAATGATGTGAAGGATA AGGAGTTCGAATCTGATTTGGAGGAGATGCATGATACAGATGAGGAGATCGATAATTTGTATAGTGCAAGCGATATTGTGATTAATAGAATGCAAAAGGA CGAGTATTTCAACATGGATGATAAGAAGTGGGACGATATGGTTAACGAGGCAATGCAGCATGGCTTCATAAGAGATACCAGAGAATGCGAGGAAATTTTG GAAGACATGCTTAACTGGGACAAGCTTCTTCCAGCTGATGTCAAGGACAAAGTCGAGAAGAAGTTCAATGAGCTGGGGGATTTGTGTGAAAATGGGGGAC TAGAGCCAGAAGAAGCTTATAAATTGTTTAAAGAATTTGAGGATCAAATAGTATTGGAGTATGGAAATAGAATGGAAGCTGAGGGCGCACCACAGTTTGA TGACACAAGTGTGCCTGACAAGAAAAAAGATACAGATGACCCACCAGGTGAGGGGCCAATTCTTAGGTGGACAACACGTGCGGTCTTTGCCCCCGGTGGT GATGCGTGGCATCCCAAGAACAGGAAAGTCAAGATGTCAGTTACTGTCAAGGAGCTTGGCCTTTCAAAACATCAATATAGGCGGTTAAGAGAACTGGTTG GCAAACGTTATCATCCTGGCAAAGATGAACTTACAATCACTAGTGAGAGGTATGAACATAGAGAAGAAAACAGAAAAGATTGCCTGAGAACTCTCTTCTC AATAATAGAGGAAGCTGGGAAAGCAAACAAATTGGCTGACGATGCTCGAGTATCATATGTCAAGTCCAGACTGAAGGCGAATCCAGCTTTTATGGAGAGG CTGCGTGCAAAGGTTGCAAGCAGAAGTTGTAATGTAGTTAACGCATGA
AA sequence Show only first row Show all	>Lus10008778 pacid=23177840 polypeptide=Lus10008778 locus=Lus10008778.g ID=Lus10008778.BGIv1.0 annot-version=v1.0 MRQSLLRNFTWRLLHSSRNVGSSITNLSIVPLPAASASSILRLYSSESGEKPGPVPESSALAQVRKEDESRQVEDVSNKDLKEMMEKYFKGEEDVLPLIM ESILQRRLSGKHEETDDELMEELRMKPLNDVKDKEFESDLEEMHDTDEEIDNLYSASDIVINRMQKDEYFNMDDKKWDDMVNEAMQHGFIRDTRECEEIL EDMLNWDKLLPADVKDKVEKKFNELGDLCENGGLEPEEAYKLFKEFEDQIVLEYGNRMEAEGAPQFDDTSVPDKKKDTDDPPGEGPILRWTTRAVFAPGG DAWHPKNRKVKMSVTVKELGLSKHQYRRLRELVGKRYHPGKDELTITSERYEHREENRKDCLRTLFSIIEEAGKANKLADDARVSYVKSRLKANPAFMER LRAKVASRSCNVVNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10008778 [exp]	0	1
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10009123 [exp]	9.8	0.8445
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	12.0	0.8554
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019682 [exp]	14.4	0.8538
AT5G27120			NOP56-like pre RNA processing ...		Lus10001716 [exp]	20.0	0.8500
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10039081 [exp]	20.8	0.8242
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025679 [exp]	22.6	0.7970
AT4G28510		ATPHB1	prohibitin 1 (.1)		Lus10019161 [exp]	24.0	0.8331
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005883 [exp]	26.6	0.8515
AT4G25740			RNA binding Plectin/S10 domain...		Lus10027519 [exp]	29.3	0.8162
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10003021 [exp]	30.6	0.8190

Compare expression of checked genes

Lus10008778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.