Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01510 703 / 0 LSF1 like SEX4 1 (.1) AT3G52180 129 / 2e-32 ATSEX4, SEX4, ATPTPKIS1, DSP4 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) AT3G10940 117 / 3e-29 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) AT4G16360 49 / 6e-06 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT5G21170 44 / 0.0002 AKINBETA1 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) AT1G09020 44 / 0.0002 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022236 [exp] 987 / 0 AT3G01510 567 / 0.0 like SEX4 1 (.1) Lus10038652 [exp] 121 / 8e-30 AT3G52180 456 / 8e-161 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Lus10037924 [exp] 120 / 3e-29 AT3G52180 464 / 2e-163 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Lus10034214 [exp] 114 / 3e-28 AT3G10940 405 / 5e-144 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10029052 [exp] 113 / 9e-28 AT3G10940 394 / 2e-139 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10004490 [exp] 52 / 1e-06 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 51 / 3e-06 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037424 [exp] 46 / 4e-05 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10041287 [exp] 45 / 7e-05 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349000 [exp] 734 / 0 AT3G01510 775 / 0.0 like SEX4 1 (.1) Potri.008G029300 [exp] 117 / 3e-28 AT3G52180 461 / 1e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.019G048600 [exp] 114 / 6e-28 AT3G10940 417 / 2e-148 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Potri.010G232200 [exp] 109 / 1e-25 AT3G52180 459 / 5e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.006G005800 [exp] 45 / 0.0001 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.014G167400 [exp] 44 / 0.0001 AT4G16360 206 / 2e-65 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.016G006400 [exp] 43 / 0.0004 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.010G023500 [exp] 43 / 0.0005 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.013G020400 [exp] 42 / 0.001 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10008779 pacid=23177844 polypeptide=Lus10008779 locus=Lus10008779.g ID=Lus10008779.BGIv1.0 annot-version=v1.0 ATGACTTCTCTTCAGTTAGCCGGATGCAGCACCGGTGGTACAGCCTTCCGTCAGCGCACTCTTTCGTACGTTCCGTTTCCCGGTAGAGATCTGAGCTCCT TTCGCCTGAAGAAGGACTATCGTATCCACGTCCTATTCGCTTCCGGAGGAGCGAGGAGAAGAGACGGCAGGATTCGCGCAATGTCGACCACTAACGGAGC TTCATCTTCGTCTGTGATGCATCTGAACGAGTACATGGTCACTCTCGACAGGCCTCTCGGCATTCGCTTCGCCTTGTCCCTGGACGGCAAAATCATCGTT CATTCTCTCAAGAGAGGCGGAAACGCAGAACGGACAAGGATAATAATGGTTGGAGATACATTGAAGAAGGCAGGCGGCTCCTCTGGCTCGCTTATGGTGA TCACTGATATTGGTGCTGCACGGAAGGTGTTACTCGAGGATGTTGATTCCAAAAGACAATTGACTCTGGTCCTAGAGAGGCCAACATTTCCATTTCCAAT TCACCTACTTGACTTCTCTAGCGATCTTGGAAGCTTTAACAGAGGACGGGTCGCCATGGTGACTTGGAACAAATCTATGCTAGCACCACATCTTCAAAGC AATGATGAAAGTGGGAATTCTGGATTTGTAGCATTTTCTTGGAACTTCCTAACGCATCATGGGTGGAAGCTTTTGAATGATCGTACTGGAAGGGCAGAAC CTCCAGAATCTAGGTATAAAACTCAAGTTGTCAGCCTTTTGTCTGAAGATGTGTCTGGAGATGGAGAATGGGCTCATGGAAACTTCCCTCTCGAAGAGTA CATTGGTGCACTAGAACGTTCGAAAGATGAATTGTACTATGATCATTCTCTCGGAATGCACTATACTAAGGTCACAGAGCAAATATTTCTGGGATCATGT CTGCAAAAGGAGGAGGATGTGAAAAGATTGTCCAGAGCTCTGTGTCTGCAACAGGGTATCACTGCTGTAATAAATTTCCAGGGTCCTACTGAAGCAGAGA ACTGGGGAATCAATCTGAATTCAATAAATGAATCATGCCAAAGGTCTAATATCCTAATGATCAACTATCCAATAAGGGATGTTGATTCGTTTGACTTGAG AAAGAAACTACCCTTTGCTGTTGGTCTCCTGTTTCGCTTGCTGAGAAAAAACCATCATGTTTTGGTAACTTGCACAACTGGTTTTGATCGATCTCCTGCT TGTGTGGTAGCATATCTGCATTGGATTACCGATACATCCCTTCACGCAGCATACAATTATGTCACTGGCTTCCACGTCTGCAAGCCTGACAGAGCTGCAA TTGCTTGGGCAACGTGGGATCTTTTTGTTATGGTGGAAAATGGAGTGCACGATGGGCCAGCAACACATGCTGTAACTTTTGTTTGGACTGGGCAGGAGGG TGAAGATGTGTCCTTGGTTGGAAGTTTTACCGGAAACTGGAAAGAACCAGTTAGGGCAACTCACAAGGGTGGACCTAGATATGAAGTTGAACTGAGGCTG GGGCAAGGAAAGTACTACTATAAGTACATTATAAATGGGGACTGGCGGCATTCAACGTACTCACCATCAGAAAGAGATGAAAGTGGTAATTTAAACAATG TACTTGTTCTAGGTGAGCCTGCCAGCATAAGGCATACTGTTAAACAAAATCAGAAGGATGTCAACATTGTTAAAGTGATCGAAAGGGGGCTAACGGAAAG CGAGAGGTTCACACTGGCTAAAGCCGGTCGTTGCATCGCGTTTTCAGTGTGTCCTCTGACACTAGCTCCCAAGTAG
AA sequence Show only first row Show all	>Lus10008779 pacid=23177844 polypeptide=Lus10008779 locus=Lus10008779.g ID=Lus10008779.BGIv1.0 annot-version=v1.0 MTSLQLAGCSTGGTAFRQRTLSYVPFPGRDLSSFRLKKDYRIHVLFASGGARRRDGRIRAMSTTNGASSSSVMHLNEYMVTLDRPLGIRFALSLDGKIIV HSLKRGGNAERTRIIMVGDTLKKAGGSSGSLMVITDIGAARKVLLEDVDSKRQLTLVLERPTFPFPIHLLDFSSDLGSFNRGRVAMVTWNKSMLAPHLQS NDESGNSGFVAFSWNFLTHHGWKLLNDRTGRAEPPESRYKTQVVSLLSEDVSGDGEWAHGNFPLEEYIGALERSKDELYYDHSLGMHYTKVTEQIFLGSC LQKEEDVKRLSRALCLQQGITAVINFQGPTEAENWGINLNSINESCQRSNILMINYPIRDVDSFDLRKKLPFAVGLLFRLLRKNHHVLVTCTTGFDRSPA CVVAYLHWITDTSLHAAYNYVTGFHVCKPDRAAIAWATWDLFVMVENGVHDGPATHAVTFVWTGQEGEDVSLVGSFTGNWKEPVRATHKGGPRYEVELRL GQGKYYYKYIINGDWRHSTYSPSERDESGNLNNVLVLGEPASIRHTVKQNQKDVNIVKVIERGLTESERFTLAKAGRCIAFSVCPLTLAPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10008779 [exp]	0	1
AT5G37790			Protein kinase superfamily pro...		Lus10017631 [exp]	2.0	0.8831
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10027400 [exp]	2.4	0.8868
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10022236 [exp]	3.5	0.8971
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10015258 [exp]	4.0	0.8903
AT1G07220			Arabidopsis thaliana protein o...		Lus10040665 [exp]	6.3	0.8631
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040559 [exp]	7.5	0.8480
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10038921 [exp]	9.5	0.8179
AT5G13260			unknown protein		Lus10002574 [exp]	10.4	0.8321
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	12.5	0.8538
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10022485 [exp]	14.2	0.8502

Compare expression of checked genes

Lus10008779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.