Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01500 295 / 3e-98 SABP3, ATBCA1, CA1, ATSABP3 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) AT5G14740 239 / 8e-78 BETACA2, CA18, CA2 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) AT1G70410 181 / 8e-55 ATBCA4 beta carbonic anhydrase 4 (.1.2.3) AT1G23730 162 / 9e-48 ATBCA3 BETA CARBONIC ANHYDRASE 3, beta carbonic anhydrase 3 (.1) AT4G33580 128 / 2e-34 ATBCA5 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) AT1G58180 104 / 3e-26 ATBCA6 A. THALIANA BETA CARBONIC ANHYDRASE 6, beta carbonic anhydrase 6 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022235 [exp] 507 / 0 AT3G01500 460 / 3e-163 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10016443 [exp] 248 / 3e-80 AT5G14740 298 / 4e-101 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10030614 [exp] 182 / 2e-55 AT1G70410 351 / 6e-123 beta carbonic anhydrase 4 (.1.2.3) Lus10030874 [exp] 162 / 7e-48 AT5G14740 319 / 8e-111 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10015833 [exp] 140 / 2e-38 AT4G33580 306 / 2e-103 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10020415 [exp] 131 / 7e-34 AT1G15820 379 / 9e-130 light harvesting complex photosystem II subunit 6 (.1) Lus10009274 [exp] 105 / 5e-26 AT4G33580 281 / 2e-94 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10015892 [exp] 55 / 2e-08 AT4G33580 205 / 3e-65 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348900 [exp] 315 / 3e-106 AT3G01500 429 / 2e-151 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Potri.010G041100 [exp] 216 / 3e-68 AT5G14740 392 / 4e-138 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.008G189800 [exp] 206 / 1e-64 AT5G14740 375 / 5e-133 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G075902 [exp] 167 / 9e-50 AT5G14740 304 / 1e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G076000 [exp] 165 / 5e-49 AT5G14740 303 / 4e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.017G044700 [exp] 137 / 1e-37 AT4G33580 339 / 8e-117 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.007G114600 [exp] 136 / 2e-37 AT4G33580 335 / 4e-115 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.005G156600 [exp] 127 / 9e-34 AT4G33580 303 / 1e-102 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00484 [flax] [poplar] Pro_CA Carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10008780 pacid=23177872 polypeptide=Lus10008780 locus=Lus10008780.g ID=Lus10008780.BGIv1.0 annot-version=v1.0 ATGTCCACTGCAGCTTCACTAAACGGTGGTTGTTTCCTTACTTCCCTCTCCACCCCCAAACCCACCAAATCACAAAGACTGCCATTAGTCTCCCACCAAG TCATCCTTGCTAAGCTCAACAACAACGCTAACACTCCCTCTTTCTCTTCTTCTTCTAACAACGCTACACCTGTCCCTAGGCTCATCAGAAACCAGCCCGT TTTCGCTGCCCCTGCCCCTCTTCTCAATCCTACTTCGGGTGAGGAAGACATGTCCAAGGACTACCAGGAAGCTATCAAGGGTCTTGAGAAGCTCCTCAGC GAGAAGGAAGAACTGAAGGAGGTGGCAGCAGAGAAAGTGGAGCAGATAAAAGCAGAGCTGACAGCAAGTGCTTCTGGGACTAAGCCCTTCGATGCTGTCC AGCGTATCAAGGATGGCTTCATCAAGTTCAAGCACGAGAAATACCAGTCAGACGAACCCGAAACTGTACGGAGAGCTGGCCAAAGGGCAGAGCCCCAAGT ACATGGTGTTTGCTTGCTCGGACTCGAGGGTGTGCCCCTCGCACGTTATGGATTTCCAGCCAGGAGAGGCATTCGTGGTGCAAACGTAGCCAACATGGTC CCTGAATTCGACCAGGTGAAGTACGCTGGGGTTGGGGCTGCGGTGGAGTACGCGGTGCTGCATCTCAAGGTTGAGAACATAGTTGTGATTGGTCACAGCG CCTGCGGTGGTATTAAGGGCCTCATGTCTTTCCCCTACGACGGCAACACTTCCACTGATTTCATAGAGGACTGGGTGAAGATTGGGTTCCCAGCAAAGAA GAAGGTGTTGGCTGAGAATGGGAGTGCTGGATTTGGAGACCAATGCACCACCTGTGAAAAGGAGGCGGTGAATGTGTCGCTGGCAAATCTGCTGACATAT CCATTTGTGAGGGATGGACTGTGCAGCAAGACACTGAAGCTGTACGGAGGATACTATGACTTTGTGAATGGAGGGTTTGAGCTGTGGAGCCTTGACTATG GCCTTTCCGCACCCATCTCAGTTAAAGATGTGGCCACCATTCTCCACTGGAAGCTCTAA
AA sequence Show only first row Show all	>Lus10008780 pacid=23177872 polypeptide=Lus10008780 locus=Lus10008780.g ID=Lus10008780.BGIv1.0 annot-version=v1.0 MSTAASLNGGCFLTSLSTPKPTKSQRLPLVSHQVILAKLNNNANTPSFSSSSNNATPVPRLIRNQPVFAAPAPLLNPTSGEEDMSKDYQEAIKGLEKLLS EKEELKEVAAEKVEQIKAELTASASGTKPFDAVQRIKDGFIKFKHEKYQSDEPETVRRAGQRAEPQVHGVCLLGLEGVPLARYGFPARRGIRGANVANMV PEFDQVKYAGVGAAVEYAVLHLKVENIVVIGHSACGGIKGLMSFPYDGNTSTDFIEDWVKIGFPAKKKVLAENGSAGFGDQCTTCEKEAVNVSLANLLTY PFVRDGLCSKTLKLYGGYYDFVNGGFELWSLDYGLSAPISVKDVATILHWKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10008780 [exp]	0	1
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10009203 [exp]	1.0	0.9708
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10019793 [exp]	2.8	0.9157
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10038925 [exp]	3.5	0.8985
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10011955 [exp]	4.9	0.8320
AT2G23580		ATMES4, ABE4	ARABIDOPSIS THALIANA METHYL ES...		Lus10005402 [exp]	13.6	0.8931
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10007429 [exp]	14.1	0.8960
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10027213 [exp]	15.7	0.8511
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10022235 [exp]	16.5	0.8845
AT1G51400			Photosystem II 5 kD protein (....		Lus10014908 [exp]	18.0	0.8866
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	19.6	0.8804

Compare expression of checked genes

Lus10008780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.