Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27925 637 / 0 DEGP, DegP1, DEG1 DegP protease 1 (.1) AT5G39830 300 / 2e-97 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) AT4G18370 196 / 9e-59 DEGP5, DEG5, HHOA PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) AT5G27660 127 / 5e-32 Trypsin family protein with PDZ domain (.1) AT2G47940 92 / 8e-20 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT5G40200 74 / 6e-14 DEGP9 DegP protease 9 (.1) AT1G65640 65 / 4e-11 DEGP4 DegP protease 4 (.1) AT5G36950 59 / 6e-09 DEGP10 DegP protease 10 (.1) AT1G28320 57 / 1e-08 DEG15 protease-related (.1) AT5G40560 56 / 2e-08 DEGP13 DegP protease 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022234 [exp] 788 / 0 AT3G27925 623 / 0.0 DegP protease 1 (.1) Lus10007262 [exp] 285 / 3e-92 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Lus10042822 [exp] 184 / 8e-54 AT4G18370 329 / 3e-112 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10028120 [exp] 166 / 3e-47 AT4G18370 284 / 4e-94 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10037815 [exp] 119 / 3e-29 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10017093 [exp] 83 / 8e-17 AT5G27660 393 / 9e-135 Trypsin family protein with PDZ domain (.1) Lus10014524 [exp] 69 / 4e-12 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10005931 [exp] 67 / 2e-11 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10032163 [exp] 67 / 2e-11 AT5G40200 843 / 0.0 DegP protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348800 [exp] 656 / 0 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.004G129200 [exp] 303 / 3e-98 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.011G083300 [exp] 196 / 5e-59 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.013G018300 [exp] 123 / 1e-30 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.014G135200 [exp] 83 / 8e-17 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.002G207200 [exp] 82 / 2e-16 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.012G077900 [exp] 73 / 1e-13 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.015G073100 [exp] 69 / 4e-12 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.008G079900 [exp] 62 / 3e-10 AT5G36950 857 / 0.0 DegP protease 10 (.1) Potri.018G001500 [exp] 61 / 6e-10 AT5G27660 102 / 2e-23 Trypsin family protein with PDZ domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [flax] [poplar] Peptidase_PA PF00089 [flax] [poplar] Trypsin Trypsin
Representative CDS sequence Show only first row Show all	>Lus10008781 pacid=23177863 polypeptide=Lus10008781 locus=Lus10008781.g ID=Lus10008781.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTTCTTCGTCTTCTCTAGCTTCAACCTTTCTCACTCGCTCATCTCCACCCACCACCTTCCTTCTGCCATCACACTCTCTTGCTCTTTCCA AACCATCTGCCTTCCACCGCTGCCGTACTTTCTCCTCTTCTCGCGCCGTCCTCTCCTTGTTCCGCCCTACTTCCGGCGGTTCTCCTCCTACTCATCGCCT TTCAATCTCAGCTGCTCTCTTTCCTGCCCGGAAACACTCTCTCTCATCCTCCGAAGCCTCCTCTTCTTCATCTTCTTCTTTTTCTTCTGTTGCTGATGCG CTGTTTGTGGTGTGCACCTCCGTCGCCCTGTCCCTGACCTTGTTCCTGGCCGATGTTGACTCCGCCGCTGCTTTCCTCGTAACCCCGCCGAGGAAGTTGC AGGCCGATGAATTGGCTACTGTTCGCCTCTTCCAGGAGAATACTCCTTCCGTCGTCTACATCACCAATTTGGCTGTCAAGCAAGACGCCTTCACTCTGGA TGTGTTGGAGGTGCCGCAGGGTTCAGGATCCGGGTTTGTATGGGACAAAGATGGTCACATTGTCACCAATTATCACGTCATTCGCGGCGCTTCCGATCTG AAAGTGACTCTATCTGACCAGTCGGCTTATGATGCAACGGTTGTTGGGTTTGACCAAGACAAAGACGTAGCTGTGTTAAGAGTTGATGCTCCCAAGGACA AACTGAAACCTATACCAGTTGGTGTCTCTGCTGACTTGCTTGTCGGTCAGAAAGTATTCGCTATTGGCAACCCTTTTGGCCTTGACCATACCCTTACCAC CGGTGTCATCAGTGGACTTCGTAGAGAAATAAGCTCTGCTGCTACAGGGCGTCCAATTCAGGATGTTATACAGACAGATGCTGCAATTAATCCAGGGAAT AGTGGAGGCCCGTTACTTGATAGTGCAGGAAACTTAATTGGGATCAACACAGCCATCTATTCACCGTCTGGGGCATCCTCTGGTGTCGGCTTTTCAATTC CAGTTGACACTGTGAGCGGCATTGTCGACCAACTAGTGAAGTTTGGAAAAGTGACAAGACCAATATTAGGAATAAAGTTCGCGCCAGATCAATCAGTGGA GCAATTGGGCGTTAGTGGGGTGCTGGTCTTAGATGCGCCTGCAAATGGTCCAGCGGGAAAAGCGGGCCTGCAACCAACTAAACGTGATGCTTATGGTAGA CTTGTGTTGGGGGATATCATAACATCCTTGAACGGGAAGAAGGTGGCAAATGGAAGTGATTTGTACAGAATTCTTGACCAATGTAACGTGGGTGACAAGA TTGTTGTTGAGGTTCTGCGTGGGGATCACAAGGAGAAGATACCGGTGATTCTTGAACCAAAGCCAGACGAGTCGTAG
AA sequence Show only first row Show all	>Lus10008781 pacid=23177863 polypeptide=Lus10008781 locus=Lus10008781.g ID=Lus10008781.BGIv1.0 annot-version=v1.0 MASSSSSSLASTFLTRSSPPTTFLLPSHSLALSKPSAFHRCRTFSSSRAVLSLFRPTSGGSPPTHRLSISAALFPARKHSLSSSEASSSSSSSFSSVADA LFVVCTSVALSLTLFLADVDSAAAFLVTPPRKLQADELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEVPQGSGSGFVWDKDGHIVTNYHVIRGASDL KVTLSDQSAYDATVVGFDQDKDVAVLRVDAPKDKLKPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGN SGGPLLDSAGNLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPANGPAGKAGLQPTKRDAYGR LVLGDIITSLNGKKVANGSDLYRILDQCNVGDKIVVEVLRGDHKEKIPVILEPKPDES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Lus10008781 [exp]	0	1
AT3G23700			Nucleic acid-binding proteins ...		Lus10022587 [exp]	2.0	0.9590
AT3G09050			unknown protein		Lus10035515 [exp]	3.2	0.9453
AT1G73885			unknown protein		Lus10005112 [exp]	3.7	0.9544
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10003328 [exp]	4.6	0.9541
AT2G36895			unknown protein		Lus10023001 [exp]	5.2	0.9338
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10018163 [exp]	7.7	0.9407
AT1G73885			unknown protein		Lus10034345 [exp]	8.7	0.9454
AT4G03410			Peroxisomal membrane 22 kDa (M...		Lus10039800 [exp]	8.7	0.9203
AT2G46100			Nuclear transport factor 2 (NT...		Lus10036387 [exp]	8.9	0.9233
AT5G65840			Thioredoxin superfamily protei...		Lus10011727 [exp]	12.2	0.9287

Compare expression of checked genes

Lus10008781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.